Strain Fitness in Pseudomonas putida KT2440 around PP_2298

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
2,625,400	+		PP_2297	0.61	+0.2
2,625,444	+		PP_2297	0.65	-2.2
2,625,550	+		PP_2297	0.75	-2.7
2,625,550	+		PP_2297	0.75	-1.4
2,625,551	-		PP_2297	0.75	-0.0
2,625,737	+				-2.2
2,625,799	+				-0.6
2,625,799	+				+0.6
2,625,799	+				+0.7
2,625,799	+				-0.1
2,625,799	+				-0.4
2,625,799	+				-3.3
2,625,800	-				+0.7
2,625,800	-				-0.2
2,625,800	-				+0.4
2,625,800	-				+0.6
2,625,810	+				-0.5
2,625,811	-				-0.5
2,625,811	-				+0.1
2,625,860	-				+0.5
2,625,860	-				+1.4
2,625,860	-				+1.5
2,625,951	+				+1.6
2,625,951	+				+2.1
2,625,951	+				+2.7
2,625,951	+				+1.5
2,625,951	+				+2.0
2,625,952	-				+2.3
2,625,952	-				+1.6
2,625,952	-				+1.8
2,625,991	+				+0.6
2,625,992	-				+1.9
2,626,057	+				+0.5
2,626,094	+				+1.7
2,626,094	+				+2.2
2,626,095	-				+1.9
2,626,102	+				+1.8
2,626,119	-				+2.5
2,626,142	-		PP_t40	0.26	+2.4
2,626,198	+				-0.9
2,626,302	-				-1.3
2,626,302	-				-1.2
2,626,302	-				+0.2
2,626,536	-		PP_2298	0.56	-2.9
2,626,653	+				-1.4
2,626,707	+				-1.1
2,626,724	-				-1.9
2,626,866	+				+0.2
2,626,867	-				+0.1
2,626,930	-				-2.4
2,627,075	-		PP_2299	0.12	-0.3
2,627,080	-		PP_2299	0.12	+1.2
2,627,208	+		PP_2299	0.22	-2.7
2,627,209	-		PP_2299	0.22	-1.9
2,627,541	+		PP_2299	0.47	-1.4
2,627,541	+		PP_2299	0.47	-1.6
2,627,664	+		PP_2299	0.56	-1.2
2,627,664	+		PP_2299	0.56	-3.2
2,627,665	-		PP_2299	0.56	-2.5