Strain Fitness in Pseudomonas putida KT2440 around PP_2257

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
2,572,541	-				+3.4
2,572,541	-				-1.5
2,572,624	+				+1.1
2,572,660	+				+3.5
2,572,660	+				-0.5
2,572,661	-				-1.2
2,572,750	-		PP_2256	0.27	+0.3
2,572,851	+		PP_2256	0.59	+1.5
2,572,851	+		PP_2256	0.59	+0.7
2,572,851	+		PP_2256	0.59	-0.9
2,572,851	+		PP_2256	0.59	+0.5
2,572,852	-		PP_2256	0.60	+0.4
2,572,941	+		PP_2256	0.88	+0.3
2,573,015	-				+0.3
2,573,015	-				-1.1
2,573,338	+				+0.6
2,573,338	+				+0.4
2,573,338	+				+1.4
2,573,338	+				+0.7
2,573,339	-				-0.6
2,573,339	-				+0.7
2,573,371	+				+1.3
2,573,441	-		PP_2257	0.13	-0.6
2,573,441	-		PP_2257	0.13	-0.9
2,573,518	+		PP_2257	0.17	+0.3
2,573,519	-		PP_2257	0.17	+1.6
2,573,519	-		PP_2257	0.17	-1.6
2,573,519	-		PP_2257	0.17	+1.2
2,573,521	+		PP_2257	0.18	+2.2
2,573,521	+		PP_2257	0.18	+1.4
2,573,521	+		PP_2257	0.18	+1.1
2,573,521	+		PP_2257	0.18	+1.1
2,573,522	-		PP_2257	0.18	+1.1
2,573,522	-		PP_2257	0.18	-0.5
2,573,522	-		PP_2257	0.18	-1.5
2,573,536	+		PP_2257	0.19	+2.2
2,573,536	+		PP_2257	0.19	+2.1
2,573,536	+		PP_2257	0.19	+1.8
2,573,592	-		PP_2257	0.22	+0.1
2,573,599	-		PP_2257	0.23	-1.0
2,573,612	+		PP_2257	0.23	+0.4
2,573,896	+		PP_2257	0.42	+0.2
2,573,896	+		PP_2257	0.42	-0.9
2,573,982	-		PP_2257	0.47	+0.3
2,574,702	+				+1.2
2,574,824	-				+1.4
2,574,824	-				+0.4
2,574,824	-				-0.3
2,574,824	-				+0.0
2,574,832	+				+1.4
2,574,832	+				-2.0
2,574,832	+				-0.6
2,574,832	+				+0.5
2,574,832	+				-0.8
2,574,833	-				+0.6
2,574,833	-				+0.4
2,574,833	-				+0.2
2,574,833	-				+0.4
2,574,837	-				-0.2
2,574,899	+				-0.7
2,574,899	+				+0.1
2,574,899	+				-0.4
2,574,899	+				+0.4
2,574,900	-				+1.0
2,574,933	-				+0.1
2,575,082	+		PP_2258	0.15	-0.4
2,575,082	+		PP_2258	0.15	+0.1
2,575,142	+		PP_2258	0.19	-0.2
2,575,142	+		PP_2258	0.19	-0.1
2,575,142	+		PP_2258	0.19	+1.6
2,575,143	-		PP_2258	0.19	-1.2
2,575,189	+		PP_2258	0.22	-0.4
2,575,189	+		PP_2258	0.22	+0.8
2,575,189	+		PP_2258	0.22	-0.1
2,575,189	+		PP_2258	0.22	-1.0
2,575,190	-		PP_2258	0.22	+1.7
2,575,244	+		PP_2258	0.25	+0.0
2,575,245	-		PP_2258	0.25	-0.6
2,575,245	-		PP_2258	0.25	+0.4
2,575,543	-		PP_2258	0.43	+1.4
2,575,543	-		PP_2258	0.43	-0.1
2,575,555	+		PP_2258	0.43	-0.2
2,575,556	-		PP_2258	0.43	+0.3
2,575,556	-		PP_2258	0.43	-0.0
2,575,556	-		PP_2258	0.43	+0.6
2,575,556	-		PP_2258	0.43	-0.5
2,575,592	+		PP_2258	0.45	-1.9
2,575,649	+		PP_2258	0.49	+1.2
2,575,649	+		PP_2258	0.49	-0.8
2,575,649	+		PP_2258	0.49	-1.9
2,575,649	+		PP_2258	0.49	+0.4
2,575,649	+		PP_2258	0.49	+0.6
2,575,649	+		PP_2258	0.49	+0.1
2,575,649	+		PP_2258	0.49	-4.0
2,575,650	-		PP_2258	0.49	-0.8
2,575,650	-		PP_2258	0.49	+0.6
2,575,650	-		PP_2258	0.49	+1.0
2,575,650	-		PP_2258	0.49	-0.5
2,575,680	-		PP_2258	0.51	-0.3
2,575,778	+		PP_2258	0.56	+0.4
2,575,782	-		PP_2258	0.57	-0.1