Strain Fitness in Pseudomonas putida KT2440 around PP_2162

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
2,467,433	+		PP_2160	0.39	+3.1
2,467,433	+		PP_2160	0.39	+0.9
2,467,433	+		PP_2160	0.39	+0.8
2,467,434	-		PP_2160	0.39	+1.8
2,467,434	-		PP_2160	0.39	+2.2
2,467,573	+		PP_2160	0.56	+2.4
2,467,573	+		PP_2160	0.56	+2.5
2,467,706	-		PP_2160	0.72	+1.7
2,467,745	-		PP_2160	0.76	+1.7
2,467,855	+		PP_2160	0.90	+2.8
2,467,856	-		PP_2160	0.90	+0.1
2,467,943	-				-0.6
2,467,943	-				-0.2
2,468,175	-		PP_2161	0.77	-0.5
2,468,312	+				+0.4
2,468,357	+				+0.3
2,468,358	-				-1.6
2,468,358	-				+0.1
2,468,358	-				-0.3
2,468,623	+		PP_2162	0.47	+0.7
2,468,894	-				-0.7
2,468,951	+				+0.7
2,469,027	+				-0.1
2,469,027	+				-0.2
2,469,027	+				-1.0
2,469,028	-				-0.2
2,469,055	+				+0.2
2,469,056	-				-2.3
2,469,056	-				-1.0
2,469,056	-				-0.0
2,469,058	-				-0.6
2,469,058	-				-0.5
2,469,071	+				-0.4
2,469,123	+				-2.0
2,469,123	+				-2.2
2,469,123	+				-1.8
2,469,123	+				+0.8
2,469,123	+				-1.0
2,469,124	-				-3.6
2,469,124	-				-2.4
2,469,124	-				-0.6
2,469,124	-				-3.0
2,469,124	-				-3.1
2,469,130	-				-2.6
2,469,286	+		PP_2163	0.23	-2.4
2,469,286	+		PP_2163	0.23	-1.7
2,469,286	+		PP_2163	0.23	-2.0
2,469,286	+		PP_2163	0.23	-1.9
2,469,286	+		PP_2163	0.23	-3.9
2,469,286	+		PP_2163	0.23	-0.9
2,469,287	-		PP_2163	0.23	-2.2
2,469,287	-		PP_2163	0.23	-2.7
2,469,287	-		PP_2163	0.23	-3.2
2,469,634	+		PP_2163	0.72	-0.6
2,469,634	+		PP_2163	0.72	-3.2
2,469,634	+		PP_2163	0.72	-2.5
2,469,634	+		PP_2163	0.72	+0.9
2,469,634	+		PP_2163	0.72	-2.3
2,469,635	-		PP_2163	0.72	-3.8
2,469,635	-		PP_2163	0.72	-1.9
2,469,647	-		PP_2163	0.74	-4.3
2,469,653	-		PP_2163	0.75	-1.3
2,469,670	-		PP_2163	0.77	-1.8
2,469,754	+		PP_2163	0.89	-1.0
2,469,754	+		PP_2163	0.89	-1.4
2,469,754	+		PP_2163	0.89	-3.8
2,469,755	-		PP_2163	0.89	-1.8
2,469,775	+				-3.3
2,469,775	+				-1.6
2,469,775	+				-0.9