Strain Fitness in Pseudomonas putida KT2440 around PP_1916

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
2,158,389	+				-2.3
2,158,389	+				-1.8
2,158,389	+				-1.7
2,158,433	+				-2.5
2,158,456	+				-2.4
2,158,456	+				-2.4
2,158,456	+				-3.6
2,158,456	+				-1.1
2,158,456	+				+0.6
2,158,568	+				+1.1
2,158,568	+				+3.0
2,158,568	+				+2.8
2,158,568	+				-0.7
2,158,570	+				+3.7
2,158,570	+				+2.7
2,160,327	-				+1.7
2,160,471	-		PP_1917	0.25	+0.3
2,160,471	-		PP_1917	0.25	+0.9
2,160,523	+		PP_1917	0.32	+1.5
2,160,536	+		PP_1917	0.33	+1.9
2,160,537	-		PP_1917	0.34	+1.6
2,160,786	+		PP_1917	0.64	+0.1
2,160,787	-		PP_1917	0.64	+1.8
2,160,787	-		PP_1917	0.64	+0.9
2,160,788	+		PP_1917	0.64	+1.1
2,160,788	+		PP_1917	0.64	+1.6
2,160,788	+		PP_1917	0.64	-1.3
2,160,788	+		PP_1917	0.64	+1.2
2,160,788	+		PP_1917	0.64	+1.3
2,160,788	+		PP_1917	0.64	+1.5
2,160,788	+		PP_1917	0.64	+2.5
2,160,789	-		PP_1917	0.64	+0.4
2,160,789	-		PP_1917	0.64	+0.2
2,160,901	+		PP_1917	0.78	+0.1
2,161,002	+				+1.7
2,161,011	+				+0.6
2,161,039	+				+1.1
2,161,066	-				-0.2
2,161,091	+				-0.1
2,161,091	+				+0.1
2,161,092	-				-2.4
2,161,229	+		PP_1918	0.14	-1.9
2,161,248	+		PP_1918	0.15	-1.0
2,161,248	+		PP_1918	0.15	-1.1
2,161,249	-		PP_1918	0.15	-1.7