Experiment: P. putida South MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1913 and PP_1914 are separated by 15 nucleotides PP_1914 and PP_1915 are separated by 203 nucleotides PP_1915 and PP_1916 are separated by 187 nucleotides
PP_1913: PP_1913 - malonyl-CoA-ACP transacylase, at 2,156,697 to 2,157,635
_1913
PP_1914: PP_1914 - 3-oxoacyl-[acyl-carrier-protein] reductase subunit, at 2,157,651 to 2,158,391
_1914
PP_1915: PP_1915 - acyl carrier protein, at 2,158,595 to 2,158,831
_1915
PP_1916: PP_1916 - beta-ketoacyl-ACP synthase II / 3-oxo-cis-vaccenoyl-[acp] synthase / FabF / KASII / acetoacetyl-[acp] synthase, at 2,159,019 to 2,160,263
_1916
Position (kb)
2157
2158
2159 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2156.683 kb on + strand at 2156.683 kb on + strand at 2156.683 kb on + strand at 2158.389 kb on + strand at 2158.389 kb on + strand at 2158.389 kb on + strand at 2158.433 kb on + strand at 2158.456 kb on + strand at 2158.456 kb on + strand at 2158.456 kb on + strand at 2158.456 kb on + strand at 2158.456 kb on + strand at 2158.568 kb on + strand at 2158.568 kb on + strand at 2158.568 kb on + strand at 2158.568 kb on + strand at 2158.570 kb on + strand at 2158.570 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 1 remove 2,156,683 + +2.1 2,156,683 + +2.5 2,156,683 + +2.4 2,158,389 + -2.3 2,158,389 + -1.8 2,158,389 + -1.7 2,158,433 + -2.5 2,158,456 + -2.4 2,158,456 + -2.4 2,158,456 + -3.6 2,158,456 + -1.1 2,158,456 + +0.6 2,158,568 + +1.1 2,158,568 + +3.0 2,158,568 + +2.8 2,158,568 + -0.7 2,158,570 + +3.7 2,158,570 + +2.7
Or see this region's nucleotide sequence