Strain Fitness in Pseudomonas putida KT2440 around PP_1383

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
1,574,355	-		PP_1381	0.79	+0.6
1,574,435	+				-0.4
1,574,435	+				+0.1
1,574,435	+				+0.8
1,574,491	+				-1.5
1,574,492	-				+1.0
1,574,492	-				+0.5
1,574,659	+		PP_1382	0.32	-0.1
1,574,663	-		PP_1382	0.33	+1.3
1,574,663	-		PP_1382	0.33	+0.9
1,574,663	-		PP_1382	0.33	+0.0
1,574,663	-		PP_1382	0.33	-0.5
1,574,724	+		PP_1382	0.45	+1.4
1,574,724	+		PP_1382	0.45	+0.4
1,574,724	+		PP_1382	0.45	-0.3
1,574,725	-		PP_1382	0.45	+0.3
1,574,877	+		PP_1382	0.74	+1.4
1,574,877	+		PP_1382	0.74	-0.1
1,574,877	+		PP_1382	0.74	+0.4
1,574,877	+		PP_1382	0.74	+1.0
1,574,878	-		PP_1382	0.74	+0.1
1,574,878	-		PP_1382	0.74	+0.5
1,574,975	-				-1.4
1,574,983	+				+0.8
1,574,984	-				-1.0
1,575,049	+				-0.4
1,575,050	-				+0.3
1,575,057	-				-0.5
1,575,057	-				+0.6
1,575,189	+				+0.8
1,575,189	+				+1.0
1,575,243	+				-0.3
1,575,244	-				+0.6
1,575,355	-		PP_1383	0.10	+0.7
1,575,355	-		PP_1383	0.10	+0.4
1,575,427	+		PP_1383	0.16	+0.7
1,575,428	-		PP_1383	0.16	+0.1
1,575,428	-		PP_1383	0.16	+0.1
1,575,428	-		PP_1383	0.16	-0.1
1,575,429	+		PP_1383	0.16	+0.2
1,575,430	-		PP_1383	0.16	-0.2
1,575,430	-		PP_1383	0.16	+2.5
1,575,430	-		PP_1383	0.16	+1.0
1,575,430	-		PP_1383	0.16	-0.9
1,575,531	+		PP_1383	0.24	+1.1
1,575,531	+		PP_1383	0.24	+0.7
1,575,615	+		PP_1383	0.31	+0.6
1,575,615	+		PP_1383	0.31	-0.3
1,575,616	-		PP_1383	0.31	+1.0
1,575,616	-		PP_1383	0.31	-0.4
1,575,616	-		PP_1383	0.31	+0.2
1,575,774	+		PP_1383	0.44	-0.8
1,575,774	+		PP_1383	0.44	+0.0
1,575,775	-		PP_1383	0.44	-0.3
1,575,775	-		PP_1383	0.44	-0.0
1,575,846	+		PP_1383	0.49	-0.0
1,575,846	+		PP_1383	0.49	+1.1
1,575,846	+		PP_1383	0.49	+0.9
1,575,846	+		PP_1383	0.49	-2.3
1,575,847	-		PP_1383	0.50	-0.1
1,575,847	-				+2.7
1,575,847	-		PP_1383	0.50	-0.5
1,575,892	+		PP_1383	0.53	+1.1
1,576,348	-		PP_1383	0.89	+1.0
1,576,348	-		PP_1383	0.89	-0.1
1,576,502	+				+0.5
1,576,503	-				+0.5
1,576,566	+				+0.9
1,576,595	-				+0.6
1,576,666	+				+0.1
1,576,667	-				-0.1
1,576,667	-				+1.4
1,576,708	-				+1.2
1,576,708	-				+0.6
1,576,739	+				+0.5
1,576,740	-				-0.1
1,576,872	+				+0.1
1,576,872	+				-0.7
1,576,873	-				-0.6
1,577,011	-		PP_1384	0.15	+0.1
1,577,013	+		PP_1384	0.15	-0.5
1,577,013	+		PP_1384	0.15	+0.3
1,577,014	-		PP_1384	0.15	-0.5
1,577,014	-		PP_1384	0.15	-0.8
1,577,014	-		PP_1384	0.15	-0.9
1,577,127	+		PP_1384	0.23	+0.5
1,577,128	-		PP_1384	0.23	-0.6
1,577,163	+		PP_1384	0.25	-0.5