Strain Fitness in Pseudomonas putida KT2440 around PP_1190

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
1,364,678	+				+0.4
1,364,789	-				-0.0
1,364,836	+				+0.7
1,364,836	+				+0.0
1,364,836	+				+0.9
1,364,836	+				-0.0
1,364,836	+				+0.4
1,364,837	-				-0.8
1,364,837	-				+0.7
1,364,837	-				+0.5
1,364,864	+		PP_1189	0.12	+0.4
1,364,884	+		PP_1189	0.15	+1.7
1,364,885	-		PP_1189	0.15	+0.7
1,364,885	-		PP_1189	0.15	+1.8
1,365,065	+		PP_1189	0.41	+0.7
1,365,065	+		PP_1189	0.41	-2.5
1,365,074	+		PP_1189	0.42	+0.5
1,365,074	+		PP_1189	0.42	+0.1
1,365,074	+		PP_1189	0.42	+2.5
1,365,075	-		PP_1189	0.42	+1.1
1,365,075	-		PP_1189	0.42	+1.1
1,365,371	-		PP_1189	0.85	-0.7
1,365,371	-		PP_1189	0.85	+0.2
1,365,371	-		PP_1189	0.85	+2.2
1,365,462	+				+1.4
1,365,462	+				+1.5
1,365,462	+				+0.3
1,365,462	+				+1.4
1,365,463	-				+1.1
1,365,463	-				+0.4
1,365,463	-				+1.2
1,365,545	+		PP_1190	0.15	+2.1
1,365,546	-		PP_1190	0.15	+2.1
1,365,546	-		PP_1190	0.15	+1.5
1,365,741	-		PP_1190	0.57	+1.3
1,365,741	-		PP_1190	0.57	+1.1
1,365,821	+		PP_1190	0.74	+2.1
1,365,822	-		PP_1190	0.74	+1.5
1,365,905	+				+0.9
1,365,906	-				+0.2
1,365,984	-				+1.4
1,365,990	+				+1.5
1,365,990	+				+1.2
1,366,007	-				-1.8
1,366,079	+		PP_1191	0.13	+1.9
1,366,079	+		PP_1191	0.13	+1.4
1,366,106	+		PP_1191	0.16	-0.3
1,366,106	+		PP_1191	0.16	+1.0
1,366,106	+		PP_1191	0.16	+1.2
1,366,107	-		PP_1191	0.17	-0.1
1,366,107	-		PP_1191	0.17	+1.5
1,366,107	-		PP_1191	0.17	-0.3
1,366,107	-		PP_1191	0.17	+0.1
1,366,627	-		PP_1191	0.90	+0.6
1,366,627	-		PP_1191	0.90	-0.1
1,366,627	-		PP_1191	0.90	-1.8
1,366,794	+				-0.5
1,366,794	+				+1.2
1,366,794	+				-0.7
1,366,794	+				+0.6
1,366,794	+				+0.9
1,366,794	+				+1.5
1,366,794	+				+0.3
1,366,795	-				-3.6
1,366,795	-				-1.3
1,366,795	-				+0.6
1,366,795	-				-0.1
1,366,919	+		PP_1192	0.20	+0.1
1,366,920	-		PP_1192	0.21	-0.6