Strain Fitness in Pseudomonas putida KT2440 around PP_1076

Experiment: P. putida South MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1075 and PP_1076 are separated by 51 nucleotidesPP_1076 and PP_1077 are separated by 302 nucleotidesPP_1077 and PP_1078 are separated by 37 nucleotides PP_1075: PP_1075 - glycerol kinase, at 1,233,786 to 1,235,285 _1075 PP_1076: PP_1076 - aquaglyceroporin, at 1,235,337 to 1,236,188 _1076 PP_1077: PP_1077 - Cys-tRNAPro deacylase, at 1,236,491 to 1,236,961 _1077 PP_1078: PP_1078 - putative ABC transporter, ATP-binding protein, at 1,236,999 to 1,238,108 _1078 Position (kb) 1235 1236 1237Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1234.359 kb on - strand, within PP_1075at 1234.359 kb on - strand, within PP_1075at 1234.359 kb on - strand, within PP_1075at 1234.393 kb on + strand, within PP_1075at 1234.394 kb on - strand, within PP_1075at 1234.394 kb on - strand, within PP_1075at 1234.394 kb on - strand, within PP_1075at 1234.498 kb on + strand, within PP_1075at 1234.499 kb on - strand, within PP_1075at 1234.499 kb on - strand, within PP_1075at 1234.499 kb on - strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.502 kb on + strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.503 kb on - strand, within PP_1075at 1234.581 kb on + strand, within PP_1075at 1234.581 kb on + strand, within PP_1075at 1234.582 kb on - strand, within PP_1075at 1234.604 kb on - strand, within PP_1075at 1234.754 kb on + strand, within PP_1075at 1234.755 kb on - strand, within PP_1075at 1234.871 kb on - strand, within PP_1075at 1234.906 kb on + strand, within PP_1075at 1234.906 kb on + strand, within PP_1075at 1234.907 kb on - strand, within PP_1075at 1234.982 kb on - strand, within PP_1075at 1235.158 kb on + strandat 1235.159 kb on - strandat 1235.186 kb on + strandat 1235.186 kb on + strandat 1235.186 kb on + strandat 1235.187 kb on - strandat 1235.190 kb on + strandat 1235.190 kb on + strandat 1235.190 kb on + strandat 1235.190 kb on + strandat 1235.191 kb on - strandat 1235.191 kb on - strandat 1235.238 kb on - strandat 1235.260 kb on + strandat 1235.260 kb on + strandat 1235.260 kb on + strandat 1235.260 kb on + strandat 1235.261 kb on - strandat 1235.261 kb on - strandat 1235.267 kb on + strandat 1235.267 kb on + strandat 1235.268 kb on - strandat 1235.268 kb on - strandat 1235.291 kb on + strandat 1235.291 kb on + strandat 1235.306 kb on + strandat 1235.352 kb on - strandat 1235.429 kb on - strand, within PP_1076at 1235.767 kb on + strand, within PP_1076at 1235.767 kb on + strand, within PP_1076at 1235.857 kb on + strand, within PP_1076at 1235.857 kb on + strand, within PP_1076at 1235.857 kb on + strand, within PP_1076at 1235.858 kb on - strand, within PP_1076at 1235.858 kb on - strand, within PP_1076at 1235.866 kb on + strand, within PP_1076at 1235.898 kb on + strand, within PP_1076at 1235.898 kb on + strand, within PP_1076at 1235.898 kb on + strand, within PP_1076at 1235.914 kb on + strand, within PP_1076at 1235.914 kb on + strand, within PP_1076at 1235.914 kb on + strand, within PP_1076at 1235.914 kb on + strand, within PP_1076at 1235.915 kb on - strand, within PP_1076at 1235.915 kb on - strand, within PP_1076at 1235.915 kb on - strand, within PP_1076at 1236.010 kb on + strand, within PP_1076at 1236.011 kb on - strand, within PP_1076at 1236.011 kb on - strand, within PP_1076at 1236.044 kb on + strand, within PP_1076at 1236.045 kb on - strand, within PP_1076at 1236.045 kb on - strand, within PP_1076at 1236.190 kb on + strandat 1236.190 kb on + strandat 1236.190 kb on + strandat 1236.190 kb on + strandat 1236.190 kb on + strandat 1236.191 kb on - strandat 1236.191 kb on - strandat 1236.191 kb on - strandat 1236.191 kb on - strandat 1236.249 kb on - strandat 1236.272 kb on + strandat 1236.273 kb on - strandat 1236.286 kb on + strandat 1236.287 kb on - strandat 1236.287 kb on - strandat 1236.288 kb on + strandat 1236.288 kb on + strandat 1236.288 kb on + strandat 1236.288 kb on + strandat 1236.288 kb on + strandat 1236.288 kb on + strandat 1236.288 kb on + strandat 1236.289 kb on - strandat 1236.289 kb on - strandat 1236.289 kb on - strandat 1236.289 kb on - strandat 1236.289 kb on - strandat 1236.289 kb on - strandat 1236.289 kb on - strandat 1236.289 kb on - strandat 1236.289 kb on - strandat 1236.289 kb on - strandat 1236.289 kb on - strandat 1236.319 kb on + strandat 1236.321 kb on + strandat 1236.371 kb on + strandat 1236.402 kb on + strandat 1236.403 kb on - strandat 1236.405 kb on + strandat 1236.504 kb on + strandat 1236.549 kb on - strand, within PP_1077at 1236.776 kb on + strand, within PP_1077at 1236.830 kb on - strand, within PP_1077at 1236.830 kb on - strand, within PP_1077at 1236.830 kb on - strand, within PP_1077at 1236.830 kb on - strand, within PP_1077at 1236.830 kb on - strand, within PP_1077at 1236.830 kb on - strand, within PP_1077at 1236.859 kb on + strand, within PP_1077at 1236.859 kb on + strand, within PP_1077at 1236.859 kb on + strand, within PP_1077at 1236.859 kb on + strand, within PP_1077at 1236.859 kb on + strand, within PP_1077at 1236.860 kb on - strand, within PP_1077at 1236.860 kb on - strand, within PP_1077at 1236.860 kb on - strand, within PP_1077at 1236.860 kb on - strand, within PP_1077at 1236.923 kb on + strandat 1236.924 kb on - strandat 1236.925 kb on + strandat 1236.925 kb on + strandat 1236.925 kb on + strandat 1236.925 kb on + strandat 1236.926 kb on - strandat 1236.926 kb on - strandat 1237.077 kb on + strandat 1237.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 1
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1,234,359 - PP_1075 0.38 -4.3
1,234,359 - PP_1075 0.38 -0.1
1,234,359 - PP_1075 0.38 -3.8
1,234,393 + PP_1075 0.40 -2.6
1,234,394 - PP_1075 0.41 -0.0
1,234,394 - PP_1075 0.41 -3.7
1,234,394 - PP_1075 0.41 -2.8
1,234,498 + PP_1075 0.47 -3.7
1,234,499 - PP_1075 0.48 -0.2
1,234,499 - PP_1075 0.48 -3.2
1,234,499 - PP_1075 0.48 -2.0
1,234,502 + PP_1075 0.48 -2.3
1,234,502 + PP_1075 0.48 -4.4
1,234,502 + PP_1075 0.48 -3.9
1,234,502 + PP_1075 0.48 -4.1
1,234,503 - PP_1075 0.48 -3.3
1,234,503 - PP_1075 0.48 -3.9
1,234,503 - PP_1075 0.48 -3.9
1,234,503 - PP_1075 0.48 -2.1
1,234,503 - PP_1075 0.48 -2.4
1,234,503 - PP_1075 0.48 -4.5
1,234,503 - PP_1075 0.48 -2.1
1,234,581 + PP_1075 0.53 -3.9
1,234,581 + PP_1075 0.53 -2.7
1,234,582 - PP_1075 0.53 -1.2
1,234,604 - PP_1075 0.55 -2.2
1,234,754 + PP_1075 0.65 -3.7
1,234,755 - PP_1075 0.65 -1.6
1,234,871 - PP_1075 0.72 -3.7
1,234,906 + PP_1075 0.75 -4.1
1,234,906 + PP_1075 0.75 -3.9
1,234,907 - PP_1075 0.75 -3.4
1,234,982 - PP_1075 0.80 -3.9
1,235,158 + -2.4
1,235,159 - -3.9
1,235,186 + -3.9
1,235,186 + -2.1
1,235,186 + -0.9
1,235,187 - -2.1
1,235,190 + -2.9
1,235,190 + -1.9
1,235,190 + -4.1
1,235,190 + -0.2
1,235,191 - +0.4
1,235,191 - -3.4
1,235,238 - -3.4
1,235,260 + -2.3
1,235,260 + -2.2
1,235,260 + -2.7
1,235,260 + -1.2
1,235,261 - -4.6
1,235,261 - -3.6
1,235,267 + -4.9
1,235,267 + -2.6
1,235,268 - -3.7
1,235,268 - -3.3
1,235,291 + -3.9
1,235,291 + -3.3
1,235,306 + -0.4
1,235,352 - -1.0
1,235,429 - PP_1076 0.11 +1.1
1,235,767 + PP_1076 0.50 -3.3
1,235,767 + PP_1076 0.50 -3.1
1,235,857 + PP_1076 0.61 -4.5
1,235,857 + PP_1076 0.61 -2.6
1,235,857 + PP_1076 0.61 -2.8
1,235,858 - PP_1076 0.61 -1.1
1,235,858 - PP_1076 0.61 -2.2
1,235,866 + PP_1076 0.62 +0.4
1,235,898 + PP_1076 0.66 -2.9
1,235,898 + PP_1076 0.66 -2.1
1,235,898 + PP_1076 0.66 -3.8
1,235,914 + PP_1076 0.68 -0.6
1,235,914 + PP_1076 0.68 -1.3
1,235,914 + PP_1076 0.68 -4.1
1,235,914 + PP_1076 0.68 -2.4
1,235,915 - PP_1076 0.68 +0.4
1,235,915 - PP_1076 0.68 -2.1
1,235,915 - PP_1076 0.68 -0.9
1,236,010 + PP_1076 0.79 -1.2
1,236,011 - PP_1076 0.79 -1.9
1,236,011 - PP_1076 0.79 -3.2
1,236,044 + PP_1076 0.83 -2.3
1,236,045 - PP_1076 0.83 -1.0
1,236,045 - PP_1076 0.83 +0.6
1,236,190 + -3.9
1,236,190 + -4.2
1,236,190 + -3.9
1,236,190 + -3.5
1,236,190 + +0.0
1,236,191 - +0.4
1,236,191 - -3.6
1,236,191 - -2.6
1,236,191 - -1.4
1,236,249 - +2.4
1,236,272 + -2.9
1,236,273 - -4.0
1,236,286 + -3.3
1,236,287 - -1.2
1,236,287 - -0.5
1,236,288 + -2.9
1,236,288 + -0.5
1,236,288 + -0.6
1,236,288 + -3.5
1,236,288 + -2.0
1,236,288 + -1.2
1,236,288 + -0.9
1,236,289 - -0.3
1,236,289 - -1.7
1,236,289 - -0.1
1,236,289 - -0.8
1,236,289 - +0.8
1,236,289 - +0.4
1,236,289 - -3.5
1,236,289 - -1.4
1,236,289 - -1.1
1,236,289 - +1.1
1,236,289 - -1.6
1,236,319 + -2.5
1,236,321 + -2.2
1,236,371 + -2.9
1,236,402 + -1.7
1,236,403 - +1.1
1,236,405 + -3.1
1,236,504 + -2.0
1,236,549 - PP_1077 0.12 +0.6
1,236,776 + PP_1077 0.61 -0.7
1,236,830 - PP_1077 0.72 -0.4
1,236,830 - PP_1077 0.72 +0.6
1,236,830 - PP_1077 0.72 +0.1
1,236,830 - PP_1077 0.72 -1.1
1,236,830 - PP_1077 0.72 -0.3
1,236,830 - PP_1077 0.72 -1.0
1,236,859 + PP_1077 0.78 -1.0
1,236,859 + PP_1077 0.78 -0.4
1,236,859 + PP_1077 0.78 -0.5
1,236,859 + PP_1077 0.78 -0.4
1,236,859 + PP_1077 0.78 -1.1
1,236,860 - PP_1077 0.78 +1.4
1,236,860 - PP_1077 0.78 -0.0
1,236,860 - PP_1077 0.78 -2.4
1,236,860 - PP_1077 0.78 -0.8
1,236,923 + +1.7
1,236,924 - -1.9
1,236,925 + +0.6
1,236,925 + +0.4
1,236,925 + +0.2
1,236,925 + -0.5
1,236,926 - -0.1
1,236,926 - +0.6
1,237,077 + +0.3
1,237,078 - -0.7

Or see this region's nucleotide sequence