Strain Fitness in Pseudomonas putida KT2440 around PP_0937

Experiment: P. putida South MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 1
1,077,828	-				-0.1
1,078,151	+				+0.5
1,078,154	-				+0.9
1,078,154	-				+0.4
1,078,154	-				-0.1
1,078,154	-				+0.1
1,078,154	-				+0.0
1,078,270	+		PP_0936	0.21	+1.4
1,078,271	-		PP_0936	0.21	+0.1
1,078,271	-		PP_0936	0.21	-3.3
1,078,334	+		PP_0936	0.32	+1.3
1,078,334	+		PP_0936	0.32	-0.6
1,078,335	-		PP_0936	0.32	-3.3
1,078,374	+		PP_0936	0.38	-0.2
1,078,374	+		PP_0936	0.38	+0.4
1,078,375	-		PP_0936	0.38	-1.2
1,078,375	-		PP_0936	0.38	-1.7
1,078,375	-		PP_0936	0.38	+0.9
1,078,549	+		PP_0936	0.67	-0.1
1,078,589	-		PP_0936	0.73	-0.5
1,078,639	+		PP_0936	0.81	+0.7
1,078,639	+		PP_0936	0.81	+0.2
1,078,639	+		PP_0936	0.81	+1.2
1,078,640	-		PP_0936	0.82	-0.2
1,078,726	-				+0.1
1,078,726	-				-1.8
1,078,726	-				+1.3
1,078,736	+				-0.2
1,078,736	+				-0.4
1,078,751	-				-2.1
1,078,764	+				-0.4
1,078,764	+				+1.7
1,078,765	-				+0.3
1,078,765	-				-2.2
1,078,765	-				-1.8
1,078,779	+				+0.0
1,078,779	+				+0.9
1,078,779	+				+0.4
1,078,779	+				-0.0
1,078,780	-				-1.3
1,078,780	-				-3.2
1,078,780	-				-2.6
1,078,925	+				-1.8
1,078,926	-				-1.9
1,078,926	-				-2.6
1,078,926	-				+0.5
1,078,930	-				-2.6
1,078,930	-				-2.6
1,078,930	-				-3.6
1,079,068	+		PP_0937	0.18	-2.4
1,079,069	-		PP_0937	0.18	-1.8
1,079,069	-		PP_0937	0.18	-3.7
1,079,172	+		PP_0937	0.25	-1.3
1,079,172	+		PP_0937	0.25	+0.5
1,079,173	-		PP_0937	0.25	-3.3
1,079,173	-		PP_0937	0.25	-2.3
1,079,198	+		PP_0937	0.27	-0.5
1,079,198	+		PP_0937	0.27	-3.1
1,079,421	+		PP_0937	0.42	-0.1
1,079,602	-		PP_0937	0.55	-2.1
1,079,602	-		PP_0937	0.55	+0.5
1,079,778	-		PP_0937	0.67	-0.9
1,079,880	-		PP_0937	0.74	-2.3
1,080,057	+		PP_0937	0.86	-4.2
1,080,111	+		PP_0937	0.90	-4.1
1,080,229	-				-0.9
1,080,229	-				-1.3
1,080,229	-				-0.8
1,080,243	+				-4.1
1,080,243	+				-2.7
1,080,243	+				-1.3
1,080,243	+				-1.1
1,080,243	+				-4.1
1,080,244	-				-3.1
1,080,244	-				-2.8
1,080,404	+				+0.8
1,080,404	+				-0.0
1,080,404	+				+1.1
1,080,404	+				+0.4
1,080,404	+				+0.2
1,080,404	+				+0.5
1,080,405	-				-2.7
1,080,405	-				-2.1
1,080,405	-				-0.7
1,080,405	-				+2.0
1,080,405	-				-0.8
1,080,405	-				+0.9
1,080,405	-				+0.9
1,080,405	-				-0.2
1,080,423	-				-1.6
1,080,436	+				+0.7
1,080,436	+				+1.5
1,080,436	+				+1.8
1,080,436	+				+0.4
1,080,437	-				+1.3
1,080,437	-				-2.4
1,080,491	+				-0.8
1,080,491	+				-0.2
1,080,492	-				+0.2
1,080,889	+		PP_0938	0.14	+1.5
1,080,889	+		PP_0938	0.14	+0.0
1,080,889	+		PP_0938	0.14	-2.2
1,080,889	+		PP_0938	0.14	-0.2
1,080,889	+		PP_0938	0.14	+1.6
1,080,889	+		PP_0938	0.14	-3.1
1,080,889	+		PP_0938	0.14	+2.0
1,080,889	+		PP_0938	0.14	+0.4
1,080,889	+		PP_0938	0.14	+0.2
1,080,890	-		PP_0938	0.14	-0.2
1,080,890	-		PP_0938	0.14	-0.2
1,080,890	-		PP_0938	0.14	+0.3
1,080,890	-		PP_0938	0.14	-0.4
1,080,890	-		PP_0938	0.14	+1.0
1,080,890	-		PP_0938	0.14	-0.1
1,080,890	-		PP_0938	0.14	+0.4
1,080,890	-		PP_0938	0.14	+2.6
1,080,890	-		PP_0938	0.14	+3.1
1,080,890	-		PP_0938	0.14	+0.3
1,080,919	-		PP_0938	0.15	+2.7
1,080,990	+		PP_0938	0.17	-2.6
1,080,990	+		PP_0938	0.17	+1.8
1,080,991	-		PP_0938	0.17	-1.9
1,080,991	-		PP_0938	0.17	+2.2
1,080,991	-		PP_0938	0.17	-2.7
1,081,022	+		PP_0938	0.18	-0.9
1,081,022	+		PP_0938	0.18	-1.6
1,081,022	+		PP_0938	0.18	-0.1
1,081,022	+		PP_0938	0.18	+1.8
1,081,023	-		PP_0938	0.18	-2.3
1,081,023	-		PP_0938	0.18	+1.4
1,081,031	-		PP_0938	0.18	-1.3
1,081,031	-		PP_0938	0.18	-0.1
1,081,031	-		PP_0938	0.18	-2.9
1,081,031	-				-0.8
1,081,166	+		PP_0938	0.21	-1.7
1,081,199	-		PP_0938	0.22	-1.6