Experiment: P. putida South MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0788 and PP_0789 are separated by 88 nucleotides PP_0789 and PP_0790 overlap by 4 nucleotides PP_0790 and PP_0791 are separated by 44 nucleotides PP_0791 and PP_0792 are separated by 2 nucleotides
PP_0788: PP_0788 - conserved protein of unknown function, at 903,742 to 905,901
_0788
PP_0789: PP_0789 - N-acetyl-anhydromuramyl-L-alanine-amidase, at 905,990 to 906,562
_0789
PP_0790: PP_0790 - Inner membrane protein AmpE, at 906,559 to 907,389
_0790
PP_0791: PP_0791 - putative hydrolase, at 907,434 to 908,210
_0791
PP_0792: PP_0792 - catabolite repressor-activator, DNA-binding transcriptional dual regulator, at 908,213 to 909,208
_0792
Position (kb) 906
907
908 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 905.868 kb on - strand at 905.900 kb on - strand at 905.900 kb on - strand at 905.912 kb on + strand at 905.912 kb on + strand at 905.912 kb on + strand at 905.913 kb on - strand at 905.913 kb on - strand at 905.913 kb on - strand at 905.913 kb on - strand at 905.951 kb on + strand at 906.002 kb on + strand at 906.002 kb on + strand at 906.002 kb on + strand at 906.003 kb on - strand at 906.188 kb on + strand, within PP_0789 at 906.188 kb on + strand, within PP_0789 at 906.325 kb on + strand, within PP_0789 at 906.326 kb on - strand, within PP_0789 at 906.374 kb on + strand, within PP_0789 at 906.376 kb on + strand, within PP_0789 at 906.376 kb on + strand, within PP_0789 at 906.377 kb on - strand, within PP_0789 at 906.377 kb on - strand, within PP_0789 at 906.643 kb on - strand, within PP_0790 at 906.643 kb on - strand, within PP_0790 at 906.766 kb on + strand, within PP_0790 at 906.766 kb on + strand, within PP_0790 at 906.767 kb on - strand, within PP_0790 at 906.767 kb on - strand, within PP_0790 at 906.809 kb on - strand, within PP_0790 at 906.960 kb on + strand, within PP_0790 at 906.961 kb on - strand, within PP_0790 at 906.961 kb on - strand, within PP_0790 at 907.063 kb on - strand, within PP_0790 at 907.063 kb on - strand, within PP_0790 at 907.554 kb on + strand, within PP_0791 at 907.564 kb on + strand, within PP_0791 at 907.705 kb on + strand, within PP_0791 at 907.706 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.724 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.769 kb on - strand, within PP_0791 at 907.904 kb on - strand, within PP_0791 at 907.906 kb on + strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.907 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.927 kb on - strand, within PP_0791 at 907.935 kb on + strand, within PP_0791 at 908.012 kb on - strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.092 kb on + strand, within PP_0791 at 908.093 kb on - strand, within PP_0791 at 908.093 kb on - strand, within PP_0791 at 908.271 kb on + strand at 908.272 kb on - strand at 908.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 1 remove 905,868 - +0.1 905,900 - -0.2 905,900 - +3.6 905,912 + -0.3 905,912 + -0.7 905,912 + +0.1 905,913 - +0.7 905,913 - +0.6 905,913 - +0.5 905,913 - -0.9 905,951 + +0.4 906,002 + -4.4 906,002 + -5.1 906,002 + -4.4 906,003 - -3.7 906,188 + PP_0789 0.35 -3.3 906,188 + PP_0789 0.35 -3.5 906,325 + PP_0789 0.58 -2.3 906,326 - PP_0789 0.59 -5.3 906,374 + PP_0789 0.67 -0.4 906,376 + PP_0789 0.67 -3.5 906,376 + PP_0789 0.67 -4.2 906,377 - PP_0789 0.68 +1.6 906,377 - PP_0789 0.68 -5.0 906,643 - PP_0790 0.10 +0.4 906,643 - PP_0790 0.10 +0.7 906,766 + PP_0790 0.25 -0.4 906,766 + PP_0790 0.25 -0.5 906,767 - PP_0790 0.25 +0.0 906,767 - PP_0790 0.25 +1.4 906,809 - PP_0790 0.30 +0.3 906,960 + PP_0790 0.48 +0.4 906,961 - PP_0790 0.48 -0.9 906,961 - PP_0790 0.48 +0.4 907,063 - PP_0790 0.61 -0.4 907,063 - PP_0790 0.61 -0.3 907,554 + PP_0791 0.15 -0.3 907,564 + PP_0791 0.17 -0.4 907,705 + PP_0791 0.35 +0.7 907,706 - PP_0791 0.35 -0.0 907,724 - PP_0791 0.37 +0.5 907,724 - PP_0791 0.37 +0.8 907,724 - PP_0791 0.37 -0.8 907,769 - PP_0791 0.43 -1.3 907,769 - PP_0791 0.43 -0.9 907,769 - PP_0791 0.43 -2.9 907,904 - PP_0791 0.60 -0.5 907,906 + PP_0791 0.61 +0.3 907,907 - PP_0791 0.61 -2.3 907,907 - PP_0791 0.61 +0.9 907,907 - PP_0791 0.61 -0.9 907,927 - PP_0791 0.63 +0.2 907,927 - PP_0791 0.63 -1.0 907,927 - PP_0791 0.63 +0.7 907,935 + PP_0791 0.64 -0.6 908,012 - PP_0791 0.74 +0.5 908,092 + PP_0791 0.85 -0.4 908,092 + PP_0791 0.85 +0.5 908,092 + PP_0791 0.85 +0.3 908,092 + PP_0791 0.85 +0.0 908,093 - PP_0791 0.85 +1.0 908,093 - PP_0791 0.85 -0.7 908,271 + -2.4 908,272 - +1.3 908,272 - +0.6
Or see this region's nucleotide sequence