Experiment: P. putida South MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0759 and PP_0760 are separated by 45 nucleotides PP_0760 and PP_0761 are separated by 268 nucleotides PP_0761 and PP_0762 are separated by 54 nucleotides
PP_0759: PP_0759 - conserved exported protein of unknown function, at 874,422 to 875,261
_0759
PP_0760: PP_0760 - conserved membrane protein of unknown function, at 875,307 to 875,891
_0760
PP_0761: PP_0761 - Ribosomal RNA small subunit methyltransferase C, at 876,160 to 877,158
_0761
PP_0762: PP_0762 - Glycerate dehydrogenase, at 877,213 to 878,178
_0762
Position (kb) 876
877
878 Strain fitness (log2 ratio) -2
-1
0
1
2 at 875.172 kb on - strand, within PP_0759 at 875.238 kb on + strand at 875.238 kb on + strand at 875.239 kb on - strand at 875.239 kb on - strand at 875.259 kb on + strand at 875.259 kb on + strand at 875.259 kb on + strand at 875.259 kb on + strand at 875.260 kb on - strand at 875.309 kb on - strand at 875.341 kb on + strand at 875.341 kb on + strand at 875.463 kb on - strand, within PP_0760 at 875.483 kb on + strand, within PP_0760 at 875.483 kb on + strand, within PP_0760 at 875.484 kb on - strand, within PP_0760 at 875.484 kb on - strand, within PP_0760 at 875.861 kb on + strand at 875.923 kb on + strand at 875.924 kb on - strand at 875.924 kb on - strand at 875.932 kb on + strand at 875.932 kb on + strand at 875.932 kb on + strand at 875.932 kb on + strand at 875.932 kb on + strand at 875.933 kb on - strand at 875.933 kb on - strand at 875.933 kb on - strand at 875.933 kb on - strand at 875.933 kb on - strand at 875.933 kb on - strand at 875.933 kb on - strand at 875.968 kb on + strand at 875.968 kb on + strand at 875.969 kb on - strand at 876.058 kb on + strand at 876.058 kb on + strand at 876.058 kb on + strand at 876.058 kb on + strand at 876.058 kb on + strand at 876.058 kb on + strand at 876.058 kb on + strand at 876.058 kb on + strand at 876.059 kb on - strand at 876.059 kb on - strand at 876.059 kb on - strand at 876.059 kb on - strand at 876.059 kb on - strand at 876.071 kb on - strand at 876.100 kb on + strand at 876.101 kb on - strand at 876.101 kb on - strand at 876.129 kb on + strand at 876.179 kb on + strand at 876.179 kb on + strand at 876.180 kb on - strand at 876.338 kb on + strand, within PP_0761 at 876.346 kb on - strand, within PP_0761 at 876.379 kb on + strand, within PP_0761 at 876.379 kb on + strand, within PP_0761 at 876.379 kb on + strand, within PP_0761 at 876.379 kb on + strand, within PP_0761 at 876.380 kb on - strand, within PP_0761 at 876.381 kb on + strand, within PP_0761 at 876.382 kb on - strand, within PP_0761 at 876.382 kb on - strand, within PP_0761 at 876.382 kb on - strand, within PP_0761 at 876.621 kb on + strand, within PP_0761 at 876.621 kb on + strand, within PP_0761 at 876.650 kb on - strand, within PP_0761 at 876.863 kb on + strand, within PP_0761 at 876.864 kb on - strand, within PP_0761 at 876.908 kb on + strand, within PP_0761 at 877.192 kb on + strand at 877.192 kb on + strand at 877.192 kb on + strand at 877.527 kb on + strand, within PP_0762 at 877.528 kb on - strand, within PP_0762 at 877.528 kb on - strand, within PP_0762 at 877.645 kb on + strand, within PP_0762 at 877.646 kb on - strand, within PP_0762 at 877.740 kb on + strand, within PP_0762 at 877.805 kb on + strand, within PP_0762 at 877.806 kb on - strand, within PP_0762 at 877.849 kb on - strand, within PP_0762 at 877.849 kb on - strand at 877.849 kb on - strand, within PP_0762
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 1 remove 875,172 - PP_0759 0.89 +0.7 875,238 + -1.0 875,238 + -0.2 875,239 - -0.1 875,239 - -1.5 875,259 + -0.1 875,259 + -0.0 875,259 + +0.3 875,259 + -0.6 875,260 - +0.0 875,309 - -0.2 875,341 + +0.8 875,341 + -1.2 875,463 - PP_0760 0.27 -0.4 875,483 + PP_0760 0.30 +0.1 875,483 + PP_0760 0.30 -0.6 875,484 - PP_0760 0.30 -0.4 875,484 - PP_0760 0.30 +0.6 875,861 + -1.4 875,923 + +0.7 875,924 - -0.7 875,924 - +0.8 875,932 + +0.7 875,932 + +1.0 875,932 + -1.9 875,932 + +0.0 875,932 + +0.7 875,933 - +0.4 875,933 - -0.1 875,933 - -1.0 875,933 - +0.4 875,933 - +0.2 875,933 - -1.4 875,933 - -1.0 875,968 + -0.9 875,968 + +0.6 875,969 - -1.5 876,058 + +0.7 876,058 + +0.9 876,058 + +0.4 876,058 + +0.5 876,058 + -0.2 876,058 + +1.1 876,058 + -0.6 876,058 + +1.4 876,059 - -0.3 876,059 - +0.4 876,059 - -0.1 876,059 - +0.3 876,059 - -0.4 876,071 - -1.1 876,100 + -2.0 876,101 - -0.4 876,101 - +1.4 876,129 + +1.2 876,179 + -0.2 876,179 + +1.9 876,180 - +0.8 876,338 + PP_0761 0.18 +0.6 876,346 - PP_0761 0.19 +1.1 876,379 + PP_0761 0.22 +0.6 876,379 + PP_0761 0.22 +0.3 876,379 + PP_0761 0.22 +1.0 876,379 + PP_0761 0.22 +0.2 876,380 - PP_0761 0.22 +0.3 876,381 + PP_0761 0.22 +1.1 876,382 - PP_0761 0.22 +1.2 876,382 - PP_0761 0.22 +0.6 876,382 - PP_0761 0.22 +0.3 876,621 + PP_0761 0.46 +0.2 876,621 + PP_0761 0.46 +1.2 876,650 - PP_0761 0.49 -0.7 876,863 + PP_0761 0.70 +1.2 876,864 - PP_0761 0.70 +0.8 876,908 + PP_0761 0.75 +0.4 877,192 + -0.6 877,192 + +0.4 877,192 + +0.6 877,527 + PP_0762 0.33 -0.7 877,528 - PP_0762 0.33 +1.0 877,528 - PP_0762 0.33 +0.2 877,645 + PP_0762 0.45 -0.9 877,646 - PP_0762 0.45 -0.2 877,740 + PP_0762 0.55 -0.9 877,805 + PP_0762 0.61 +1.3 877,806 - PP_0762 0.61 -0.3 877,849 - PP_0762 0.66 +0.0 877,849 - +1.6 877,849 - PP_0762 0.66 -1.3
Or see this region's nucleotide sequence