Experiment: P. putida South MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0668 and PP_0669 are separated by 90 nucleotides PP_0669 and PP_0670 are separated by 133 nucleotides
PP_0668: PP_0668 - putative Transmembrane sensor, at 775,895 to 776,860
_0668
PP_0669: PP_0669 - Outer membrane ferric siderophore receptor, at 776,951 to 779,383
_0669
PP_0670: PP_0670 - Transporter, bile acid/Na+ symporter family, at 779,517 to 780,470
_0670
Position (kb) 776
777
778
779
780 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 776.043 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668 at 776.246 kb on + strand at 776.366 kb on + strand, within PP_0668 at 776.499 kb on + strand, within PP_0668 at 776.500 kb on - strand, within PP_0668 at 776.752 kb on + strand, within PP_0668 at 776.753 kb on - strand, within PP_0668 at 776.824 kb on + strand at 776.825 kb on - strand at 776.920 kb on + strand at 776.920 kb on + strand at 776.920 kb on + strand at 776.921 kb on - strand at 776.921 kb on - strand at 776.921 kb on - strand at 776.921 kb on - strand at 776.921 kb on - strand at 777.009 kb on + strand at 777.202 kb on - strand, within PP_0669 at 777.364 kb on + strand, within PP_0669 at 777.375 kb on - strand, within PP_0669 at 777.375 kb on - strand, within PP_0669 at 777.479 kb on - strand, within PP_0669 at 777.498 kb on + strand, within PP_0669 at 777.498 kb on + strand, within PP_0669 at 777.499 kb on - strand, within PP_0669 at 777.499 kb on - strand, within PP_0669 at 777.499 kb on - strand, within PP_0669 at 777.499 kb on - strand, within PP_0669 at 777.624 kb on - strand, within PP_0669 at 777.634 kb on + strand, within PP_0669 at 777.662 kb on + strand, within PP_0669 at 777.716 kb on - strand, within PP_0669 at 777.807 kb on - strand, within PP_0669 at 777.807 kb on - strand, within PP_0669 at 777.874 kb on + strand, within PP_0669 at 777.874 kb on + strand, within PP_0669 at 777.874 kb on + strand, within PP_0669 at 777.874 kb on + strand, within PP_0669 at 777.875 kb on - strand, within PP_0669 at 777.875 kb on - strand, within PP_0669 at 777.878 kb on + strand, within PP_0669 at 777.879 kb on - strand, within PP_0669 at 777.933 kb on - strand, within PP_0669 at 777.933 kb on - strand, within PP_0669 at 777.933 kb on - strand, within PP_0669 at 777.933 kb on - strand, within PP_0669 at 777.933 kb on - strand, within PP_0669 at 777.985 kb on + strand, within PP_0669 at 777.985 kb on + strand, within PP_0669 at 777.986 kb on - strand, within PP_0669 at 777.989 kb on + strand, within PP_0669 at 777.989 kb on + strand, within PP_0669 at 777.990 kb on - strand, within PP_0669 at 778.014 kb on - strand, within PP_0669 at 778.072 kb on + strand, within PP_0669 at 778.114 kb on + strand, within PP_0669 at 778.141 kb on + strand, within PP_0669 at 778.142 kb on - strand, within PP_0669 at 778.142 kb on - strand, within PP_0669 at 778.214 kb on + strand, within PP_0669 at 778.214 kb on + strand, within PP_0669 at 778.214 kb on + strand, within PP_0669 at 778.214 kb on + strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.220 kb on + strand, within PP_0669 at 778.301 kb on + strand, within PP_0669 at 778.383 kb on - strand, within PP_0669 at 778.406 kb on + strand, within PP_0669 at 778.407 kb on - strand, within PP_0669 at 778.407 kb on - strand, within PP_0669 at 778.413 kb on - strand, within PP_0669 at 778.487 kb on + strand, within PP_0669 at 778.487 kb on + strand, within PP_0669 at 778.488 kb on - strand, within PP_0669 at 778.488 kb on - strand, within PP_0669 at 778.517 kb on + strand, within PP_0669 at 778.517 kb on + strand, within PP_0669 at 778.517 kb on + strand, within PP_0669 at 778.518 kb on - strand, within PP_0669 at 778.637 kb on - strand, within PP_0669 at 778.637 kb on - strand, within PP_0669 at 778.637 kb on - strand, within PP_0669 at 778.637 kb on - strand, within PP_0669 at 778.670 kb on + strand, within PP_0669 at 778.670 kb on + strand, within PP_0669 at 778.712 kb on + strand, within PP_0669 at 778.722 kb on - strand, within PP_0669 at 778.722 kb on - strand, within PP_0669 at 778.796 kb on + strand, within PP_0669 at 778.796 kb on + strand, within PP_0669 at 778.797 kb on - strand, within PP_0669 at 778.949 kb on - strand, within PP_0669 at 778.949 kb on - strand, within PP_0669 at 778.992 kb on + strand, within PP_0669 at 778.992 kb on + strand, within PP_0669 at 778.993 kb on - strand, within PP_0669 at 779.004 kb on - strand, within PP_0669 at 779.009 kb on + strand, within PP_0669 at 779.009 kb on + strand, within PP_0669 at 779.009 kb on + strand, within PP_0669 at 779.010 kb on - strand, within PP_0669 at 779.010 kb on - strand, within PP_0669 at 779.010 kb on - strand, within PP_0669 at 779.010 kb on - strand, within PP_0669 at 779.010 kb on - strand, within PP_0669 at 779.024 kb on + strand, within PP_0669 at 779.024 kb on + strand, within PP_0669 at 779.024 kb on + strand, within PP_0669 at 779.148 kb on - strand at 779.148 kb on - strand at 779.148 kb on - strand at 779.189 kb on + strand at 779.210 kb on + strand at 779.210 kb on + strand at 779.210 kb on + strand at 779.210 kb on + strand at 779.237 kb on + strand at 779.238 kb on - strand at 779.238 kb on - strand at 779.267 kb on + strand at 779.267 kb on + strand at 779.267 kb on + strand at 779.267 kb on + strand at 779.268 kb on - strand at 779.298 kb on - strand at 779.301 kb on - strand at 779.325 kb on - strand at 779.382 kb on - strand at 779.390 kb on + strand at 779.390 kb on + strand at 779.493 kb on - strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.544 kb on + strand at 779.544 kb on + strand at 779.545 kb on - strand at 779.545 kb on - strand at 779.545 kb on - strand at 779.548 kb on + strand at 779.548 kb on + strand at 779.548 kb on + strand at 779.548 kb on + strand at 779.548 kb on + strand at 779.548 kb on + strand at 779.549 kb on - strand at 779.549 kb on - strand at 779.549 kb on - strand at 779.549 kb on - strand at 779.571 kb on + strand at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.768 kb on - strand, within PP_0670 at 779.768 kb on - strand, within PP_0670 at 779.769 kb on + strand, within PP_0670 at 779.770 kb on - strand, within PP_0670 at 779.808 kb on + strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 780.037 kb on + strand, within PP_0670 at 780.038 kb on - strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.153 kb on - strand, within PP_0670 at 780.309 kb on + strand, within PP_0670 at 780.309 kb on + strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.329 kb on - strand, within PP_0670 at 780.329 kb on - strand, within PP_0670
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 1 remove 776,043 - PP_0668 0.15 +0.3 776,047 - PP_0668 0.16 -0.6 776,047 - PP_0668 0.16 +0.0 776,047 - PP_0668 0.16 +0.3 776,246 + +1.1 776,366 + PP_0668 0.49 +0.4 776,499 + PP_0668 0.63 -0.4 776,500 - PP_0668 0.63 -0.3 776,752 + PP_0668 0.89 -0.2 776,753 - PP_0668 0.89 -1.6 776,824 + -0.6 776,825 - -0.2 776,920 + +1.0 776,920 + +0.2 776,920 + +0.1 776,921 - -1.5 776,921 - -1.1 776,921 - -0.0 776,921 - -0.3 776,921 - +0.4 777,009 + +0.1 777,202 - PP_0669 0.10 +0.1 777,364 + PP_0669 0.17 +0.4 777,375 - PP_0669 0.17 -0.3 777,375 - PP_0669 0.17 +0.4 777,479 - PP_0669 0.22 -0.1 777,498 + PP_0669 0.22 -1.7 777,498 + PP_0669 0.22 +0.6 777,499 - PP_0669 0.23 +0.1 777,499 - PP_0669 0.23 +0.3 777,499 - PP_0669 0.23 +0.7 777,499 - PP_0669 0.23 -0.4 777,624 - PP_0669 0.28 +0.8 777,634 + PP_0669 0.28 -0.3 777,662 + PP_0669 0.29 +0.6 777,716 - PP_0669 0.31 -0.4 777,807 - PP_0669 0.35 +0.3 777,807 - PP_0669 0.35 +0.4 777,874 + PP_0669 0.38 -0.6 777,874 + PP_0669 0.38 -0.8 777,874 + PP_0669 0.38 -0.3 777,874 + PP_0669 0.38 +1.7 777,875 - PP_0669 0.38 +1.1 777,875 - PP_0669 0.38 +1.2 777,878 + PP_0669 0.38 +0.0 777,879 - PP_0669 0.38 -0.4 777,933 - PP_0669 0.40 -0.8 777,933 - PP_0669 0.40 -0.0 777,933 - PP_0669 0.40 +0.0 777,933 - PP_0669 0.40 -1.8 777,933 - PP_0669 0.40 -0.2 777,985 + PP_0669 0.42 -0.9 777,985 + PP_0669 0.42 -0.0 777,986 - PP_0669 0.43 +0.6 777,989 + PP_0669 0.43 -0.3 777,989 + PP_0669 0.43 -0.1 777,990 - PP_0669 0.43 +0.9 778,014 - PP_0669 0.44 +1.2 778,072 + PP_0669 0.46 +0.5 778,114 + PP_0669 0.48 -0.4 778,141 + PP_0669 0.49 +0.7 778,142 - PP_0669 0.49 +0.2 778,142 - PP_0669 0.49 -2.0 778,214 + PP_0669 0.52 -1.1 778,214 + PP_0669 0.52 -1.0 778,214 + PP_0669 0.52 +1.0 778,214 + PP_0669 0.52 +1.1 778,215 - PP_0669 0.52 -1.0 778,215 - PP_0669 0.52 -0.4 778,215 - PP_0669 0.52 +0.6 778,215 - PP_0669 0.52 +0.5 778,215 - PP_0669 0.52 -0.2 778,215 - PP_0669 0.52 +0.5 778,220 + PP_0669 0.52 +0.8 778,301 + PP_0669 0.55 +0.3 778,383 - PP_0669 0.59 +0.1 778,406 + PP_0669 0.60 +0.5 778,407 - PP_0669 0.60 +1.1 778,407 - PP_0669 0.60 +1.0 778,413 - PP_0669 0.60 -1.1 778,487 + PP_0669 0.63 +0.7 778,487 + PP_0669 0.63 +0.2 778,488 - PP_0669 0.63 +0.5 778,488 - PP_0669 0.63 +0.1 778,517 + PP_0669 0.64 +1.0 778,517 + PP_0669 0.64 +0.2 778,517 + PP_0669 0.64 -2.3 778,518 - PP_0669 0.64 +0.3 778,637 - PP_0669 0.69 -0.3 778,637 - PP_0669 0.69 +0.8 778,637 - PP_0669 0.69 -0.7 778,637 - PP_0669 0.69 -0.5 778,670 + PP_0669 0.71 -1.5 778,670 + PP_0669 0.71 +0.7 778,712 + PP_0669 0.72 +0.1 778,722 - PP_0669 0.73 -0.4 778,722 - PP_0669 0.73 -0.0 778,796 + PP_0669 0.76 -0.7 778,796 + PP_0669 0.76 +0.2 778,797 - PP_0669 0.76 +0.4 778,949 - PP_0669 0.82 +1.1 778,949 - PP_0669 0.82 -0.5 778,992 + PP_0669 0.84 +0.9 778,992 + PP_0669 0.84 +0.2 778,993 - PP_0669 0.84 +0.4 779,004 - PP_0669 0.84 +0.4 779,009 + PP_0669 0.85 -0.3 779,009 + PP_0669 0.85 -1.5 779,009 + PP_0669 0.85 -0.5 779,010 - PP_0669 0.85 +0.4 779,010 - PP_0669 0.85 -1.0 779,010 - PP_0669 0.85 -1.0 779,010 - PP_0669 0.85 +1.9 779,010 - PP_0669 0.85 -0.5 779,024 + PP_0669 0.85 -0.1 779,024 + PP_0669 0.85 -0.3 779,024 + PP_0669 0.85 -1.4 779,148 - -0.2 779,148 - +0.3 779,148 - -0.5 779,189 + +0.2 779,210 + -1.2 779,210 + +0.5 779,210 + -0.3 779,210 + -0.4 779,237 + +0.9 779,238 - +0.9 779,238 - -0.4 779,267 + -0.3 779,267 + -0.4 779,267 + +0.6 779,267 + -0.0 779,268 - -0.0 779,298 - -0.4 779,301 - +0.1 779,325 - +0.4 779,382 - +0.7 779,390 + +1.1 779,390 + -0.6 779,493 - -0.0 779,499 + -0.7 779,499 + +0.7 779,499 + +0.3 779,499 + -3.0 779,499 + +0.3 779,499 + +1.0 779,499 + +0.9 779,500 - +0.6 779,500 - -0.0 779,500 - +0.6 779,500 - -0.1 779,500 - -1.3 779,500 - -0.0 779,500 - -0.5 779,544 + -0.1 779,544 + +0.3 779,545 - -0.1 779,545 - -0.8 779,545 - -0.0 779,548 + +1.5 779,548 + -0.5 779,548 + -1.0 779,548 + +0.2 779,548 + +1.5 779,548 + -0.2 779,549 - -0.3 779,549 - -0.4 779,549 - +1.1 779,549 - -0.5 779,571 + +0.9 779,767 + PP_0670 0.26 -1.4 779,767 + PP_0670 0.26 +0.3 779,767 + PP_0670 0.26 -0.5 779,767 + PP_0670 0.26 +0.6 779,768 - PP_0670 0.26 +0.9 779,768 - PP_0670 0.26 +0.7 779,769 + PP_0670 0.26 +0.7 779,770 - PP_0670 0.27 -4.3 779,808 + PP_0670 0.31 -0.7 779,809 - PP_0670 0.31 +0.4 779,809 - PP_0670 0.31 -0.1 779,809 - PP_0670 0.31 +0.7 780,037 + PP_0670 0.55 -1.2 780,038 - PP_0670 0.55 -1.6 780,136 + PP_0670 0.65 +0.5 780,136 + PP_0670 0.65 +0.2 780,136 + PP_0670 0.65 +1.0 780,153 - PP_0670 0.67 -0.9 780,309 + PP_0670 0.83 +0.7 780,309 + PP_0670 0.83 +0.1 780,310 - PP_0670 0.83 -0.9 780,310 - PP_0670 0.83 -0.4 780,310 - PP_0670 0.83 +0.5 780,310 - PP_0670 0.83 +0.0 780,329 - PP_0670 0.85 +0.4 780,329 - PP_0670 0.85 -1.9
Or see this region's nucleotide sequence