Experiment: P. putida South MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0437 and PP_0438 overlap by 11 nucleotides PP_0438 and PP_0439 overlap by 32 nucleotides PP_0439 and PP_t01 are separated by 152 nucleotides PP_t01 and PP_t02 are separated by 24 nucleotides PP_t02 and PP_t03 are separated by 29 nucleotides PP_t03 and PP_0440 are separated by 78 nucleotides
PP_0437: PP_0437 - bifunctional biotin-[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 530,087 to 531,046
_0437
PP_0438: PP_0438 - Type III pantothenate kinase, at 531,036 to 531,785
_0438
PP_0439: PP_0439 - conserved protein of unknown function, at 531,754 to 532,218
_0439
PP_t01: PP_t01 - tRNA-Tyr, at 532,371 to 532,454
_t01
PP_t02: PP_t02 - tRNA-Gly, at 532,479 to 532,552
_t02
PP_t03: PP_t03 - tRNA-Thr, at 532,582 to 532,657
_t03
PP_0440: PP_0440 - Elongation factor Tu-A, at 532,736 to 533,929
_0440
Position (kb) 531
532 Strain fitness (log2 ratio) -1
0
1
2
3 at 530.053 kb on + strand at 531.792 kb on + strand at 531.792 kb on + strand at 531.793 kb on - strand at 531.815 kb on + strand, within PP_0439 at 531.836 kb on - strand, within PP_0439 at 531.836 kb on - strand, within PP_0439 at 531.838 kb on + strand, within PP_0439 at 531.839 kb on - strand, within PP_0439 at 531.839 kb on - strand, within PP_0439 at 531.842 kb on + strand, within PP_0439 at 531.842 kb on + strand, within PP_0439 at 531.843 kb on - strand, within PP_0439 at 531.843 kb on - strand, within PP_0439 at 531.898 kb on + strand, within PP_0439 at 531.899 kb on - strand, within PP_0439 at 531.899 kb on - strand, within PP_0439 at 532.172 kb on + strand at 532.658 kb on + strand at 532.658 kb on + strand at 532.658 kb on + strand at 532.658 kb on + strand at 532.658 kb on + strand at 532.658 kb on + strand at 532.660 kb on + strand at 532.710 kb on + strand at 532.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 1 remove 530,053 + -0.0 531,792 + +0.6 531,792 + +2.0 531,793 - +2.9 531,815 + PP_0439 0.13 +0.7 531,836 - PP_0439 0.18 +2.0 531,836 - PP_0439 0.18 +1.7 531,838 + PP_0439 0.18 +2.0 531,839 - PP_0439 0.18 +1.8 531,839 - PP_0439 0.18 +2.6 531,842 + PP_0439 0.19 +1.0 531,842 + PP_0439 0.19 +1.1 531,843 - PP_0439 0.19 +1.3 531,843 - PP_0439 0.19 +0.7 531,898 + PP_0439 0.31 +0.1 531,899 - PP_0439 0.31 +1.4 531,899 - PP_0439 0.31 +1.6 532,172 + +0.9 532,658 + +1.4 532,658 + +2.6 532,658 + +0.0 532,658 + +1.9 532,658 + +1.5 532,658 + +1.5 532,660 + +2.1 532,710 + +1.1 532,742 - +0.5
Or see this region's nucleotide sequence