Experiment: P. putida South MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0270 and PP_0271 are separated by 1 nucleotides PP_0271 and PP_0272 are separated by 140 nucleotides PP_0272 and PP_0273 are separated by 65 nucleotides PP_0273 and PP_5435 are separated by 175 nucleotides PP_5435 and PP_0274 are separated by 41 nucleotides
PP_0270: PP_0270 - Sensor histidine kinase, at 327,882 to 329,249
_0270
PP_0271: PP_0271 - DNA-binding response regulator, at 329,251 to 329,970
_0271
PP_0272: PP_0272 - Outer membrane ferric siderophore receptor, at 330,111 to 332,408
_0272
PP_0273: PP_0273 - conserved protein of unknown function, at 332,474 to 332,686
_0273
PP_5435: PP_5435 - conserved protein of unknown function, at 332,862 to 333,215
_5435
PP_0274: PP_0274 - putative transcriptional regulator containing HTH domain, at 333,257 to 333,730
_0274
Position (kb) 330
331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 329.118 kb on + strand at 329.288 kb on + strand at 329.288 kb on + strand at 329.288 kb on + strand at 329.289 kb on - strand at 329.480 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.581 kb on - strand, within PP_0271 at 329.623 kb on + strand, within PP_0271 at 329.624 kb on - strand, within PP_0271 at 329.676 kb on - strand, within PP_0271 at 329.784 kb on + strand, within PP_0271 at 329.785 kb on - strand, within PP_0271 at 329.910 kb on - strand at 329.910 kb on - strand at 330.011 kb on + strand at 330.012 kb on - strand at 330.012 kb on - strand at 330.022 kb on - strand at 330.022 kb on - strand at 330.022 kb on - strand at 330.022 kb on - strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.032 kb on - strand at 330.032 kb on - strand at 330.032 kb on - strand at 330.032 kb on - strand at 330.032 kb on - strand at 330.274 kb on + strand at 330.306 kb on + strand at 330.307 kb on - strand at 330.308 kb on + strand at 330.308 kb on + strand at 330.309 kb on - strand at 330.505 kb on - strand, within PP_0272 at 330.594 kb on + strand, within PP_0272 at 330.711 kb on + strand, within PP_0272 at 330.712 kb on - strand, within PP_0272 at 330.720 kb on + strand, within PP_0272 at 330.721 kb on - strand, within PP_0272 at 330.721 kb on - strand, within PP_0272 at 330.721 kb on - strand, within PP_0272 at 330.721 kb on - strand, within PP_0272 at 330.721 kb on - strand, within PP_0272 at 330.921 kb on + strand, within PP_0272 at 330.922 kb on - strand, within PP_0272 at 330.922 kb on - strand, within PP_0272 at 330.927 kb on + strand, within PP_0272 at 330.927 kb on + strand, within PP_0272 at 330.927 kb on + strand, within PP_0272 at 330.927 kb on + strand, within PP_0272 at 330.927 kb on + strand, within PP_0272 at 330.928 kb on - strand, within PP_0272 at 330.975 kb on + strand, within PP_0272 at 331.044 kb on + strand, within PP_0272 at 331.044 kb on + strand, within PP_0272 at 331.045 kb on - strand, within PP_0272 at 331.185 kb on + strand, within PP_0272 at 331.185 kb on + strand, within PP_0272 at 331.186 kb on - strand, within PP_0272 at 331.186 kb on - strand, within PP_0272 at 331.223 kb on - strand, within PP_0272 at 331.329 kb on + strand, within PP_0272 at 331.330 kb on - strand, within PP_0272 at 331.365 kb on + strand, within PP_0272 at 331.365 kb on + strand, within PP_0272 at 331.366 kb on - strand, within PP_0272 at 331.479 kb on + strand, within PP_0272 at 331.480 kb on - strand, within PP_0272 at 331.542 kb on + strand, within PP_0272 at 331.542 kb on + strand, within PP_0272 at 331.542 kb on + strand, within PP_0272 at 331.542 kb on + strand, within PP_0272 at 331.543 kb on - strand, within PP_0272 at 331.543 kb on - strand, within PP_0272 at 331.608 kb on + strand, within PP_0272 at 331.609 kb on - strand, within PP_0272 at 331.678 kb on - strand, within PP_0272 at 331.692 kb on + strand, within PP_0272 at 331.692 kb on + strand, within PP_0272 at 331.692 kb on + strand, within PP_0272 at 331.693 kb on - strand, within PP_0272 at 331.693 kb on - strand, within PP_0272 at 331.710 kb on + strand, within PP_0272 at 331.710 kb on + strand, within PP_0272 at 331.710 kb on + strand, within PP_0272 at 331.711 kb on - strand, within PP_0272 at 331.711 kb on - strand, within PP_0272 at 331.711 kb on - strand, within PP_0272 at 331.711 kb on - strand, within PP_0272 at 331.711 kb on - strand, within PP_0272 at 331.719 kb on + strand, within PP_0272 at 331.720 kb on - strand, within PP_0272 at 331.720 kb on - strand, within PP_0272 at 331.728 kb on + strand, within PP_0272 at 331.728 kb on + strand, within PP_0272 at 331.728 kb on + strand, within PP_0272 at 331.729 kb on - strand, within PP_0272 at 331.729 kb on - strand, within PP_0272 at 331.736 kb on + strand, within PP_0272 at 331.803 kb on + strand, within PP_0272 at 331.804 kb on - strand, within PP_0272 at 331.814 kb on + strand, within PP_0272 at 331.814 kb on + strand, within PP_0272 at 331.815 kb on - strand, within PP_0272 at 331.860 kb on + strand, within PP_0272 at 331.860 kb on + strand, within PP_0272 at 331.932 kb on + strand, within PP_0272 at 331.933 kb on - strand, within PP_0272 at 331.964 kb on + strand, within PP_0272 at 332.026 kb on - strand, within PP_0272 at 332.026 kb on - strand, within PP_0272 at 332.026 kb on - strand, within PP_0272 at 332.097 kb on + strand, within PP_0272 at 332.192 kb on + strand at 332.192 kb on + strand at 332.192 kb on + strand at 332.193 kb on - strand at 332.196 kb on - strand at 332.265 kb on + strand at 332.265 kb on + strand at 332.266 kb on - strand at 332.325 kb on + strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.328 kb on + strand at 332.328 kb on + strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.346 kb on + strand at 332.346 kb on + strand at 332.347 kb on - strand at 332.347 kb on - strand at 332.376 kb on - strand at 332.475 kb on + strand at 332.476 kb on - strand at 332.487 kb on - strand at 332.616 kb on + strand, within PP_0273 at 332.616 kb on + strand, within PP_0273 at 332.616 kb on + strand, within PP_0273 at 332.617 kb on - strand, within PP_0273 at 332.617 kb on - strand, within PP_0273 at 332.715 kb on + strand at 332.715 kb on + strand at 332.778 kb on + strand at 332.779 kb on - strand at 332.795 kb on + strand at 332.796 kb on - strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.929 kb on + strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.085 kb on - strand, within PP_5435 at 333.085 kb on - strand, within PP_5435 at 333.085 kb on - strand, within PP_5435 at 333.146 kb on + strand, within PP_5435 at 333.153 kb on + strand, within PP_5435 at 333.153 kb on + strand, within PP_5435 at 333.154 kb on - strand, within PP_5435
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 1 remove 329,118 + +0.6 329,288 + -0.0 329,288 + -0.4 329,288 + -1.4 329,289 - +0.8 329,480 + PP_0271 0.32 +0.3 329,580 + PP_0271 0.46 +0.4 329,580 + PP_0271 0.46 -0.3 329,580 + PP_0271 0.46 -0.7 329,580 + PP_0271 0.46 -0.2 329,580 + PP_0271 0.46 +0.3 329,581 - PP_0271 0.46 -0.2 329,623 + PP_0271 0.52 +0.8 329,624 - PP_0271 0.52 -0.1 329,676 - PP_0271 0.59 +0.0 329,784 + PP_0271 0.74 +0.1 329,785 - PP_0271 0.74 -0.1 329,910 - +0.4 329,910 - -0.7 330,011 + -0.3 330,012 - +0.5 330,012 - +1.3 330,022 - -0.1 330,022 - -0.0 330,022 - +0.5 330,022 - -2.2 330,031 + +0.5 330,031 + -0.3 330,031 + +0.5 330,031 + +0.6 330,031 + +1.1 330,031 + -0.2 330,032 - +0.2 330,032 - -0.7 330,032 - -0.0 330,032 - +1.1 330,032 - -1.2 330,274 + -0.9 330,306 + +0.9 330,307 - -0.4 330,308 + -0.1 330,308 + -0.1 330,309 - -0.0 330,505 - PP_0272 0.17 -0.6 330,594 + PP_0272 0.21 +0.6 330,711 + PP_0272 0.26 +0.2 330,712 - PP_0272 0.26 -1.3 330,720 + PP_0272 0.27 -0.0 330,721 - PP_0272 0.27 +0.2 330,721 - PP_0272 0.27 -0.3 330,721 - PP_0272 0.27 +0.3 330,721 - PP_0272 0.27 -1.3 330,721 - PP_0272 0.27 -0.4 330,921 + PP_0272 0.35 +0.1 330,922 - PP_0272 0.35 -1.7 330,922 - PP_0272 0.35 +0.4 330,927 + PP_0272 0.36 +0.4 330,927 + PP_0272 0.36 -0.0 330,927 + PP_0272 0.36 +1.1 330,927 + PP_0272 0.36 +0.9 330,927 + PP_0272 0.36 -0.5 330,928 - PP_0272 0.36 +0.5 330,975 + PP_0272 0.38 -1.9 331,044 + PP_0272 0.41 -0.4 331,044 + PP_0272 0.41 +0.3 331,045 - PP_0272 0.41 +0.5 331,185 + PP_0272 0.47 -0.4 331,185 + PP_0272 0.47 +0.0 331,186 - PP_0272 0.47 +0.4 331,186 - PP_0272 0.47 +0.8 331,223 - PP_0272 0.48 -1.2 331,329 + PP_0272 0.53 -0.0 331,330 - PP_0272 0.53 +0.2 331,365 + PP_0272 0.55 +0.7 331,365 + PP_0272 0.55 -0.8 331,366 - PP_0272 0.55 +0.5 331,479 + PP_0272 0.60 +0.5 331,480 - PP_0272 0.60 +2.4 331,542 + PP_0272 0.62 +0.1 331,542 + PP_0272 0.62 -0.3 331,542 + PP_0272 0.62 -1.2 331,542 + PP_0272 0.62 -0.3 331,543 - PP_0272 0.62 -2.7 331,543 - PP_0272 0.62 -0.5 331,608 + PP_0272 0.65 +0.4 331,609 - PP_0272 0.65 +1.0 331,678 - PP_0272 0.68 +0.5 331,692 + PP_0272 0.69 -0.1 331,692 + PP_0272 0.69 +0.5 331,692 + PP_0272 0.69 -0.0 331,693 - PP_0272 0.69 +0.9 331,693 - PP_0272 0.69 -0.8 331,710 + PP_0272 0.70 -1.0 331,710 + PP_0272 0.70 +0.2 331,710 + PP_0272 0.70 +0.3 331,711 - PP_0272 0.70 -0.3 331,711 - PP_0272 0.70 -0.3 331,711 - PP_0272 0.70 +1.1 331,711 - PP_0272 0.70 -0.6 331,711 - PP_0272 0.70 -1.2 331,719 + PP_0272 0.70 -0.3 331,720 - PP_0272 0.70 -1.1 331,720 - PP_0272 0.70 -0.1 331,728 + PP_0272 0.70 -0.1 331,728 + PP_0272 0.70 +0.3 331,728 + PP_0272 0.70 -0.3 331,729 - PP_0272 0.70 +1.0 331,729 - PP_0272 0.70 +0.5 331,736 + PP_0272 0.71 -0.7 331,803 + PP_0272 0.74 +0.4 331,804 - PP_0272 0.74 +0.5 331,814 + PP_0272 0.74 -1.1 331,814 + PP_0272 0.74 +0.0 331,815 - PP_0272 0.74 +0.3 331,860 + PP_0272 0.76 -1.2 331,860 + PP_0272 0.76 -1.3 331,932 + PP_0272 0.79 +0.2 331,933 - PP_0272 0.79 -0.1 331,964 + PP_0272 0.81 -0.2 332,026 - PP_0272 0.83 -0.2 332,026 - PP_0272 0.83 -2.0 332,026 - PP_0272 0.83 -1.0 332,097 + PP_0272 0.86 +0.2 332,192 + -0.4 332,192 + +0.3 332,192 + +0.1 332,193 - +0.1 332,196 - -0.0 332,265 + +1.0 332,265 + +0.5 332,266 - -0.3 332,325 + +0.0 332,326 - +0.6 332,326 - +0.6 332,326 - +0.5 332,326 - -0.1 332,326 - -0.0 332,326 - +1.9 332,326 - -1.1 332,328 + -0.2 332,328 + -2.3 332,329 - +0.2 332,329 - -0.4 332,329 - +1.8 332,329 - +0.7 332,329 - +0.6 332,329 - -0.6 332,346 + +0.0 332,346 + +0.0 332,347 - +0.2 332,347 - -1.0 332,376 - +0.3 332,475 + -2.8 332,476 - -1.4 332,487 - -0.6 332,616 + PP_0273 0.67 +0.4 332,616 + PP_0273 0.67 +0.0 332,616 + PP_0273 0.67 +1.0 332,617 - PP_0273 0.67 +0.2 332,617 - PP_0273 0.67 -0.5 332,715 + -0.7 332,715 + +0.7 332,778 + -1.2 332,779 - +0.5 332,795 + -2.8 332,796 - -0.1 332,837 + +0.4 332,837 + -0.3 332,837 + +0.6 332,837 + -0.4 332,837 + -0.2 332,838 - -0.1 332,838 - -0.1 332,838 - +0.9 332,838 - +0.6 332,838 - +0.1 332,929 + PP_5435 0.19 -0.1 333,081 - PP_5435 0.62 -1.7 333,081 - PP_5435 0.62 -1.9 333,081 - PP_5435 0.62 +0.3 333,081 - PP_5435 0.62 -1.8 333,084 + PP_5435 0.63 +0.4 333,084 + PP_5435 0.63 +0.1 333,084 + PP_5435 0.63 -2.3 333,084 + PP_5435 0.63 +0.2 333,085 - PP_5435 0.63 +0.6 333,085 - PP_5435 0.63 +0.7 333,085 - PP_5435 0.63 +0.1 333,146 + PP_5435 0.80 +0.3 333,153 + PP_5435 0.82 +0.5 333,153 + PP_5435 0.82 +0.5 333,154 - PP_5435 0.82 +0.0
Or see this region's nucleotide sequence