Experiment: P. putida South MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5421 and PP_0014 overlap by 20 nucleotides PP_0014 and PP_0015 overlap by 4 nucleotides
PP_5421: PP_5421 - conserved protein of unknown function, at 16,589 to 17,227
_5421
PP_0014: PP_0014 - putative transposase, at 17,208 to 19,166
_0014
PP_0015: PP_0015 - putative transposon protein, at 19,163 to 20,122
_0015
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 16.270 kb on - strand at 16.389 kb on + strand at 16.389 kb on + strand at 16.472 kb on + strand at 16.597 kb on - strand at 16.781 kb on + strand, within PP_5421 at 16.781 kb on + strand, within PP_5421 at 16.791 kb on - strand, within PP_5421 at 16.791 kb on - strand, within PP_5421 at 16.791 kb on - strand, within PP_5421 at 16.804 kb on - strand, within PP_5421 at 16.804 kb on - strand, within PP_5421 at 16.907 kb on + strand, within PP_5421 at 16.984 kb on + strand, within PP_5421 at 16.984 kb on + strand, within PP_5421 at 16.984 kb on + strand, within PP_5421 at 16.984 kb on + strand, within PP_5421 at 16.984 kb on + strand, within PP_5421 at 16.984 kb on + strand, within PP_5421 at 16.985 kb on - strand, within PP_5421 at 16.985 kb on - strand, within PP_5421 at 16.997 kb on + strand, within PP_5421 at 16.997 kb on + strand, within PP_5421 at 16.997 kb on + strand, within PP_5421 at 17.043 kb on + strand, within PP_5421 at 17.044 kb on - strand, within PP_5421 at 17.044 kb on - strand, within PP_5421 at 17.044 kb on - strand, within PP_5421 at 17.044 kb on - strand, within PP_5421 at 17.044 kb on - strand, within PP_5421 at 17.071 kb on + strand, within PP_5421 at 17.093 kb on + strand, within PP_5421 at 17.093 kb on + strand, within PP_5421 at 17.093 kb on + strand, within PP_5421 at 17.094 kb on - strand, within PP_5421 at 17.094 kb on - strand, within PP_5421 at 17.127 kb on + strand, within PP_5421 at 17.158 kb on + strand, within PP_5421 at 17.158 kb on + strand, within PP_5421 at 17.158 kb on + strand, within PP_5421 at 17.159 kb on - strand, within PP_5421 at 17.159 kb on - strand, within PP_5421 at 17.159 kb on - strand, within PP_5421 at 17.159 kb on - strand, within PP_5421 at 17.257 kb on + strand at 17.257 kb on + strand at 17.283 kb on - strand at 17.283 kb on - strand at 17.283 kb on - strand at 17.349 kb on + strand at 17.349 kb on + strand at 17.349 kb on + strand at 17.349 kb on + strand at 17.349 kb on + strand at 17.358 kb on + strand at 17.358 kb on + strand at 17.358 kb on + strand at 17.359 kb on - strand at 17.397 kb on + strand at 17.415 kb on + strand, within PP_0014 at 17.415 kb on + strand, within PP_0014 at 17.415 kb on + strand, within PP_0014 at 17.416 kb on - strand, within PP_0014 at 17.416 kb on - strand, within PP_0014 at 17.504 kb on - strand, within PP_0014 at 17.504 kb on - strand, within PP_0014 at 17.508 kb on - strand, within PP_0014 at 17.521 kb on - strand, within PP_0014 at 17.528 kb on - strand, within PP_0014 at 17.558 kb on + strand, within PP_0014 at 17.559 kb on - strand, within PP_0014 at 17.565 kb on - strand, within PP_0014 at 17.647 kb on + strand, within PP_0014 at 17.647 kb on + strand, within PP_0014 at 17.647 kb on + strand, within PP_0014 at 17.647 kb on + strand, within PP_0014 at 17.650 kb on + strand, within PP_0014 at 17.650 kb on + strand, within PP_0014 at 17.650 kb on + strand, within PP_0014 at 17.651 kb on - strand, within PP_0014 at 17.658 kb on - strand, within PP_0014 at 17.658 kb on - strand, within PP_0014 at 17.733 kb on - strand, within PP_0014 at 17.735 kb on + strand, within PP_0014 at 17.736 kb on - strand, within PP_0014 at 17.743 kb on - strand, within PP_0014 at 17.872 kb on - strand, within PP_0014 at 17.893 kb on - strand, within PP_0014 at 17.962 kb on + strand, within PP_0014 at 17.962 kb on + strand, within PP_0014 at 17.962 kb on + strand, within PP_0014 at 17.962 kb on + strand, within PP_0014 at 17.962 kb on + strand, within PP_0014 at 17.962 kb on + strand, within PP_0014 at 17.963 kb on - strand, within PP_0014 at 18.105 kb on + strand, within PP_0014 at 18.106 kb on - strand, within PP_0014 at 18.106 kb on - strand, within PP_0014 at 18.106 kb on - strand, within PP_0014 at 18.132 kb on - strand, within PP_0014 at 18.133 kb on - strand, within PP_0014 at 18.244 kb on + strand, within PP_0014 at 18.244 kb on + strand, within PP_0014 at 18.245 kb on - strand, within PP_0014 at 18.321 kb on + strand, within PP_0014 at 18.322 kb on - strand, within PP_0014 at 18.322 kb on - strand, within PP_0014 at 18.392 kb on + strand, within PP_0014 at 18.578 kb on + strand, within PP_0014 at 18.578 kb on + strand, within PP_0014 at 18.579 kb on - strand, within PP_0014 at 18.704 kb on + strand, within PP_0014 at 18.725 kb on + strand, within PP_0014 at 18.751 kb on + strand, within PP_0014 at 18.752 kb on - strand, within PP_0014 at 18.901 kb on - strand, within PP_0014 at 18.902 kb on + strand, within PP_0014 at 18.902 kb on + strand, within PP_0014 at 18.914 kb on + strand, within PP_0014 at 18.915 kb on - strand, within PP_0014 at 18.915 kb on - strand, within PP_0014 at 18.915 kb on - strand, within PP_0014 at 18.926 kb on + strand, within PP_0014 at 18.926 kb on + strand, within PP_0014 at 18.939 kb on + strand, within PP_0014 at 18.940 kb on - strand, within PP_0014 at 18.950 kb on + strand, within PP_0014 at 18.951 kb on - strand, within PP_0014 at 19.066 kb on + strand at 19.066 kb on + strand at 19.066 kb on + strand at 19.067 kb on - strand at 19.097 kb on + strand at 19.097 kb on + strand at 19.097 kb on + strand at 19.097 kb on + strand at 19.098 kb on - strand at 19.098 kb on - strand at 19.098 kb on - strand at 19.098 kb on - strand at 19.103 kb on + strand at 19.104 kb on - strand at 19.157 kb on + strand at 19.157 kb on + strand at 19.158 kb on - strand at 19.158 kb on - strand at 19.158 kb on - strand at 19.181 kb on + strand at 19.205 kb on + strand at 19.205 kb on + strand at 19.206 kb on - strand at 19.206 kb on - strand at 19.206 kb on - strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.214 kb on - strand at 19.231 kb on + strand at 19.232 kb on - strand at 19.269 kb on + strand, within PP_0015 at 19.270 kb on - strand, within PP_0015 at 19.309 kb on + strand, within PP_0015 at 19.309 kb on + strand, within PP_0015 at 19.310 kb on - strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.368 kb on - strand, within PP_0015 at 19.368 kb on - strand, within PP_0015 at 19.529 kb on - strand, within PP_0015 at 19.529 kb on - strand, within PP_0015 at 19.542 kb on + strand, within PP_0015 at 19.543 kb on - strand, within PP_0015 at 19.610 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.628 kb on + strand, within PP_0015 at 19.628 kb on + strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.672 kb on + strand, within PP_0015 at 19.720 kb on - strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.860 kb on + strand, within PP_0015 at 19.876 kb on + strand, within PP_0015 at 19.877 kb on - strand, within PP_0015 at 19.877 kb on - strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.887 kb on - strand, within PP_0015 at 19.898 kb on + strand, within PP_0015 at 19.913 kb on + strand, within PP_0015 at 19.913 kb on + strand, within PP_0015 at 19.914 kb on - strand at 20.021 kb on + strand, within PP_0015 at 20.021 kb on + strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.116 kb on + strand at 20.116 kb on + strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.154 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 1 remove 16,270 - -1.2 16,389 + +2.5 16,389 + -0.0 16,472 + -3.0 16,597 - +0.2 16,781 + PP_5421 0.30 -1.1 16,781 + PP_5421 0.30 -0.7 16,791 - PP_5421 0.32 +0.9 16,791 - PP_5421 0.32 -0.3 16,791 - PP_5421 0.32 -0.3 16,804 - PP_5421 0.34 -0.7 16,804 - PP_5421 0.34 +0.4 16,907 + PP_5421 0.50 -0.4 16,984 + PP_5421 0.62 -1.0 16,984 + PP_5421 0.62 +0.2 16,984 + PP_5421 0.62 -2.3 16,984 + PP_5421 0.62 -0.6 16,984 + PP_5421 0.62 -0.9 16,984 + PP_5421 0.62 +0.1 16,985 - PP_5421 0.62 -0.2 16,985 - PP_5421 0.62 +0.3 16,997 + PP_5421 0.64 -0.5 16,997 + PP_5421 0.64 -0.7 16,997 + PP_5421 0.64 -0.1 17,043 + PP_5421 0.71 -1.9 17,044 - PP_5421 0.71 +0.1 17,044 - PP_5421 0.71 -0.6 17,044 - PP_5421 0.71 +0.7 17,044 - PP_5421 0.71 -0.5 17,044 - PP_5421 0.71 -0.1 17,071 + PP_5421 0.75 -0.6 17,093 + PP_5421 0.79 -0.4 17,093 + PP_5421 0.79 -2.2 17,093 + PP_5421 0.79 -0.0 17,094 - PP_5421 0.79 +0.7 17,094 - PP_5421 0.79 -0.9 17,127 + PP_5421 0.84 -0.8 17,158 + PP_5421 0.89 -1.0 17,158 + PP_5421 0.89 -3.1 17,158 + PP_5421 0.89 -3.5 17,159 - PP_5421 0.89 -0.7 17,159 - PP_5421 0.89 -1.7 17,159 - PP_5421 0.89 -0.9 17,159 - PP_5421 0.89 +0.2 17,257 + -0.5 17,257 + -0.9 17,283 - -0.5 17,283 - +1.0 17,283 - -0.0 17,349 + -2.6 17,349 + +0.7 17,349 + -1.7 17,349 + -1.3 17,349 + -2.8 17,358 + -3.4 17,358 + -3.1 17,358 + -0.9 17,359 - +0.2 17,397 + -0.4 17,415 + PP_0014 0.11 -0.3 17,415 + PP_0014 0.11 -0.9 17,415 + PP_0014 0.11 -2.4 17,416 - PP_0014 0.11 -0.4 17,416 - PP_0014 0.11 -0.7 17,504 - PP_0014 0.15 -0.9 17,504 - PP_0014 0.15 -1.3 17,508 - PP_0014 0.15 -0.3 17,521 - PP_0014 0.16 +0.0 17,528 - PP_0014 0.16 +0.3 17,558 + PP_0014 0.18 +0.2 17,559 - PP_0014 0.18 -0.4 17,565 - PP_0014 0.18 -0.1 17,647 + PP_0014 0.22 -0.8 17,647 + PP_0014 0.22 -0.9 17,647 + PP_0014 0.22 -0.9 17,647 + PP_0014 0.22 -1.3 17,650 + PP_0014 0.23 -0.0 17,650 + PP_0014 0.23 -0.9 17,650 + PP_0014 0.23 -1.0 17,651 - PP_0014 0.23 +0.1 17,658 - PP_0014 0.23 +0.6 17,658 - PP_0014 0.23 -0.2 17,733 - PP_0014 0.27 +0.4 17,735 + PP_0014 0.27 -1.0 17,736 - PP_0014 0.27 -0.7 17,743 - PP_0014 0.27 -0.5 17,872 - PP_0014 0.34 -0.6 17,893 - PP_0014 0.35 +0.2 17,962 + PP_0014 0.38 -1.1 17,962 + PP_0014 0.38 -0.8 17,962 + PP_0014 0.38 -0.9 17,962 + PP_0014 0.38 -0.1 17,962 + PP_0014 0.38 -1.3 17,962 + PP_0014 0.38 -0.6 17,963 - PP_0014 0.39 +0.1 18,105 + PP_0014 0.46 -0.7 18,106 - PP_0014 0.46 +0.9 18,106 - PP_0014 0.46 -0.4 18,106 - PP_0014 0.46 -1.4 18,132 - PP_0014 0.47 -0.1 18,133 - PP_0014 0.47 -0.4 18,244 + PP_0014 0.53 -1.0 18,244 + PP_0014 0.53 -1.9 18,245 - PP_0014 0.53 +0.6 18,321 + PP_0014 0.57 -2.3 18,322 - PP_0014 0.57 +0.6 18,322 - PP_0014 0.57 -0.5 18,392 + PP_0014 0.60 +0.0 18,578 + PP_0014 0.70 -0.3 18,578 + PP_0014 0.70 -1.4 18,579 - PP_0014 0.70 -0.4 18,704 + PP_0014 0.76 +0.4 18,725 + PP_0014 0.77 -1.2 18,751 + PP_0014 0.79 -0.6 18,752 - PP_0014 0.79 -1.9 18,901 - PP_0014 0.86 +0.2 18,902 + PP_0014 0.86 +0.6 18,902 + PP_0014 0.86 -0.8 18,914 + PP_0014 0.87 -2.5 18,915 - PP_0014 0.87 -0.0 18,915 - PP_0014 0.87 -1.3 18,915 - PP_0014 0.87 -0.3 18,926 + PP_0014 0.88 +0.1 18,926 + PP_0014 0.88 -0.5 18,939 + PP_0014 0.88 -0.6 18,940 - PP_0014 0.88 -0.2 18,950 + PP_0014 0.89 -0.8 18,951 - PP_0014 0.89 +0.9 19,066 + +0.3 19,066 + +0.1 19,066 + -0.6 19,067 - -0.3 19,097 + -0.5 19,097 + -0.0 19,097 + -0.6 19,097 + -1.4 19,098 - -0.1 19,098 - -0.6 19,098 - +0.1 19,098 - -1.3 19,103 + +0.3 19,104 - -0.7 19,157 + -0.2 19,157 + -0.8 19,158 - -0.1 19,158 - -0.3 19,158 - -1.3 19,181 + +0.1 19,205 + -1.4 19,205 + +0.6 19,206 - -0.7 19,206 - -0.3 19,206 - -1.7 19,213 + -3.4 19,213 + -2.0 19,213 + -0.8 19,213 + -0.4 19,213 + -2.0 19,214 - +0.1 19,231 + -1.6 19,232 - -1.3 19,269 + PP_0015 0.11 -0.3 19,270 - PP_0015 0.11 -1.0 19,309 + PP_0015 0.15 -1.2 19,309 + PP_0015 0.15 -3.8 19,310 - PP_0015 0.15 +0.8 19,367 + PP_0015 0.21 -0.9 19,367 + PP_0015 0.21 -0.1 19,367 + PP_0015 0.21 -3.5 19,368 - PP_0015 0.21 -0.4 19,368 - PP_0015 0.21 +0.1 19,529 - PP_0015 0.38 -0.4 19,529 - PP_0015 0.38 -0.4 19,542 + PP_0015 0.39 -0.1 19,543 - PP_0015 0.40 +0.5 19,610 + PP_0015 0.47 -1.2 19,618 + PP_0015 0.47 +0.3 19,618 + PP_0015 0.47 -0.6 19,618 + PP_0015 0.47 -0.5 19,619 - PP_0015 0.47 -0.8 19,619 - PP_0015 0.47 +0.0 19,619 - PP_0015 0.47 -1.5 19,628 + PP_0015 0.48 -1.2 19,628 + PP_0015 0.48 +0.1 19,629 - PP_0015 0.49 -1.5 19,629 - PP_0015 0.49 -1.1 19,629 - PP_0015 0.49 -0.7 19,629 - PP_0015 0.49 -1.6 19,629 - PP_0015 0.49 +0.1 19,672 + PP_0015 0.53 -0.4 19,720 - PP_0015 0.58 +1.1 19,789 + PP_0015 0.65 -1.1 19,789 + PP_0015 0.65 +0.1 19,789 + PP_0015 0.65 +0.9 19,790 - PP_0015 0.65 -1.7 19,790 - PP_0015 0.65 -0.2 19,790 - PP_0015 0.65 +0.3 19,790 - PP_0015 0.65 -0.3 19,860 + PP_0015 0.73 -1.6 19,876 + PP_0015 0.74 -0.7 19,877 - PP_0015 0.74 -0.4 19,877 - PP_0015 0.74 +0.5 19,886 + PP_0015 0.75 -0.8 19,886 + PP_0015 0.75 -1.1 19,886 + PP_0015 0.75 -1.3 19,887 - PP_0015 0.75 -0.7 19,898 + PP_0015 0.77 -0.9 19,913 + PP_0015 0.78 -1.4 19,913 + PP_0015 0.78 -0.8 19,914 - +0.9 20,021 + PP_0015 0.89 -0.8 20,021 + PP_0015 0.89 -4.3 20,022 - PP_0015 0.89 -1.8 20,022 - PP_0015 0.89 +0.4 20,022 - PP_0015 0.89 +0.5 20,022 - PP_0015 0.89 +0.1 20,116 + -4.0 20,116 + -4.8 20,117 - +0.6 20,117 - -0.5 20,117 - -0.6 20,117 - +0.2 20,154 + -4.8
Or see this region's nucleotide sequence