Strain Fitness in Pseudomonas putida KT2440 around PP_4535

Experiment: P. putida South MOI 10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 10
5,148,493	+		PP_5695	0.83	+0.4
5,148,493	+		PP_5695	0.83	+0.3
5,148,493	+		PP_5695	0.83	+0.6
5,148,494	-		PP_5695	0.83	-0.0
5,148,494	-		PP_5695	0.83	-0.2
5,148,547	+				-0.1
5,148,547	+				-1.2
5,148,547	+				+1.6
5,148,547	+				+0.6
5,148,548	-				-1.3
5,148,548	-				+0.0
5,148,548	-				+0.8
5,148,548	-				+0.5
5,148,548	-				-0.9
5,148,805	-		PP_4534	0.70	+0.0
5,148,805	-		PP_4534	0.70	-0.2
5,148,805	-		PP_4534	0.70	-0.3
5,148,849	+		PP_4534	0.88	-2.3
5,148,849	+		PP_4534	0.88	+1.5
5,148,850	-		PP_4534	0.88	+0.7
5,148,850	-		PP_4534	0.88	+0.2
5,148,882	+				-2.1
5,148,882	+				+0.3
5,148,883	-				+0.9
5,148,883	-				-0.3
5,148,907	-				-4.2
5,149,019	+				-0.6
5,149,020	-				-1.2
5,149,020	-				-0.5
5,149,020	-				+0.1
5,149,020	-				-0.1
5,149,020	-				-0.2
5,149,020	-				+1.8
5,149,025	+				-2.0
5,149,025	+				+0.2
5,149,025	+				+0.5
5,149,026	-				+0.6
5,149,026	-				-0.1
5,149,026	-				+1.1
5,149,026	-				-0.2
5,149,026	-				-0.3
5,149,026	-				+1.2
5,149,026	-				+0.8
5,149,026	-				+0.5
5,149,089	+				-2.0
5,149,090	-				+0.6
5,149,124	+				+1.6
5,149,124	+				+0.5
5,149,125	-				-2.0
5,149,125	-				-1.3
5,149,125	-				+1.2
5,149,142	+				-0.0
5,149,143	-				-1.4
5,149,194	+				-3.8
5,149,215	-				-1.8
5,149,253	+				-0.0
5,149,254	-				-0.1
5,149,261	-				-0.8
5,149,288	+				+0.2
5,149,288	+				-0.5
5,149,289	-				+0.2
5,149,289	-				-1.2
5,149,289	-				-2.8
5,149,289	-				-0.8
5,149,289	-				-0.7
5,149,289	-				+0.0
5,149,292	+				+0.8
5,149,292	+				-0.6
5,149,293	-				-1.3
5,149,293	-				+0.3
5,149,293	-				+0.4
5,149,348	+				-1.7
5,149,348	+				+0.3
5,149,349	-				+0.5
5,149,349	-				-0.0
5,149,351	+				-0.4
5,149,351	+				-0.5
5,149,351	+				+0.3
5,149,351	+				-1.9
5,149,352	-				-0.6
5,149,352	-				+1.1
5,149,352	-				+0.2
5,149,352	-				-0.2
5,149,355	+				-0.1
5,149,355	+				-0.3
5,149,356	-				-4.5
5,149,356	-				+0.2
5,149,356	-				+1.6
5,149,356	-				-2.4
5,149,356	-				-1.6
5,149,356	-				-1.3
5,149,356	-				-1.2
5,149,356	-				+0.7
5,149,356	-				-1.5
5,149,378	+				-1.4
5,149,378	+				+0.5
5,149,520	+				+0.0
5,149,520	+				+0.6
5,149,520	+				+0.0
5,149,520	+				-1.4
5,149,520	+				+0.5
5,149,520	+				+1.8
5,149,520	+				+0.1
5,149,521	-				-0.2
5,149,521	-				+1.1
5,149,521	-				+1.3
5,149,521	-				+0.5
5,149,521	-				-0.2
5,149,521	-				-0.9
5,149,620	+				+1.3
5,149,669	-		PP_4535	0.10	+1.4
5,149,687	+		PP_4535	0.11	-0.0
5,149,688	-		PP_4535	0.11	+0.4
5,149,688	-		PP_4535	0.11	-2.6
5,149,688	-		PP_4535	0.11	-0.7
5,149,723	-		PP_4535	0.13	+0.2
5,149,723	-		PP_4535	0.13	-0.3
5,149,733	+		PP_4535	0.14	+0.0
5,149,733	+		PP_4535	0.14	-0.3
5,149,733	+		PP_4535	0.14	-0.1
5,149,734	-				+0.8
5,149,734	-		PP_4535	0.14	-0.2
5,149,776	+		PP_4535	0.16	+0.7
5,149,776	+		PP_4535	0.16	-1.2
5,149,776	+		PP_4535	0.16	-0.4
5,149,776	+		PP_4535	0.16	-0.4
5,149,777	-		PP_4535	0.16	+0.4
5,149,777	-		PP_4535	0.16	-0.4
5,149,802	+		PP_4535	0.17	-1.2
5,149,835	+		PP_4535	0.19	-2.8
5,149,836	-		PP_4535	0.19	+0.1
5,149,836	-		PP_4535	0.19	+0.8
5,149,926	+		PP_4535	0.23	-0.8
5,149,959	-		PP_4535	0.25	-2.3
5,150,048	+		PP_4535	0.29	-2.8
5,150,048	+		PP_4535	0.29	-3.6
5,150,048	+		PP_4535	0.29	+1.7
5,150,048	+		PP_4535	0.29	-0.6
5,150,049	-		PP_4535	0.29	+0.7
5,150,070	-		PP_4535	0.30	-0.8
5,150,327	+		PP_4535	0.43	+0.8
5,150,328	-		PP_4535	0.43	-2.4
5,150,523	-		PP_4535	0.53	-3.3
5,150,578	+		PP_4535	0.56	-1.1
5,150,578	+		PP_4535	0.56	-1.3
5,150,579	-		PP_4535	0.56	+0.1
5,150,579	-		PP_4535	0.56	+1.0
5,150,723	+		PP_4535	0.63	+0.3
5,150,723	+		PP_4535	0.63	-1.9
5,150,723	+		PP_4535	0.63	-0.4
5,150,723	+		PP_4535	0.63	-0.7
5,150,724	-		PP_4535	0.63	-0.1
5,150,756	+		PP_4535	0.65	-1.2
5,150,756	+		PP_4535	0.65	-1.4
5,150,756	+		PP_4535	0.65	+0.7
5,150,756	+		PP_4535	0.65	+0.4
5,150,756	+		PP_4535	0.65	-0.9
5,150,756	+		PP_4535	0.65	+0.3
5,150,757	-		PP_4535	0.65	+0.7
5,150,757	-		PP_4535	0.65	-1.8
5,150,757	-		PP_4535	0.65	-3.2
5,150,813	+		PP_4535	0.67	-0.4
5,150,814	-		PP_4535	0.67	-0.5
5,150,849	+		PP_4535	0.69	-0.5
5,150,927	+		PP_4535	0.73	+0.8
5,151,074	+		PP_4535	0.80	-1.4
5,151,075	-		PP_4535	0.80	-0.2
5,151,075	-		PP_4535	0.80	-1.1
5,151,075	-		PP_4535	0.80	-0.0
5,151,075	-		PP_4535	0.80	-1.5
5,151,075	-		PP_4535	0.80	-0.1
5,151,075	-		PP_4535	0.80	+0.3
5,151,193	+		PP_4535	0.86	+0.2
5,151,193	+		PP_4535	0.86	-0.5
5,151,193	+		PP_4535	0.86	-0.3
5,151,194	-		PP_4535	0.86	-0.5
5,151,194	-		PP_4535	0.86	+0.3
5,151,194	-		PP_4535	0.86	-1.4
5,151,194	-		PP_4535	0.86	-0.7
5,151,226	+		PP_4535	0.88	-3.0
5,151,226	+		PP_4535	0.88	-0.3
5,151,226	+		PP_4535	0.88	+0.8
5,151,227	-		PP_4535	0.88	-0.8
5,151,269	+				+1.2
5,151,269	+				-0.5
5,151,269	+				-4.1
5,151,269	+				-0.9
5,151,269	+				+0.2
5,151,270	-				+1.1
5,151,270	-				+0.7
5,151,340	-				+0.9
5,151,357	+				+0.8
5,151,406	+				+0.0
5,151,407	-				+1.3
5,151,423	+				-0.5
5,151,424	-				-1.2
5,151,434	-				-0.6
5,151,451	+				+0.3
5,151,452	-				-0.4
5,151,452	-				-0.5
5,151,455	+				+0.7
5,151,455	+				-0.2
5,151,490	+				-2.3
5,151,491	-				+0.2
5,151,494	+				+0.8
5,151,494	+				-0.9
5,151,494	+				-1.0
5,151,495	-				-0.1
5,151,495	-				+1.8
5,151,495	-				-0.0
5,151,541	+		PP_5696	0.17	-0.2
5,151,542	-		PP_5696	0.17	-0.2
5,151,778	+		PP_5696	0.68	-0.3
5,151,778	+		PP_5696	0.68	+0.6
5,151,779	-		PP_5696	0.69	-2.3
5,151,779	-		PP_5696	0.69	-3.7
5,151,802	+		PP_5696	0.74	-0.2
5,151,803	-		PP_5696	0.74	-0.4
5,151,844	+		PP_5696	0.83	+1.1
5,151,858	+		PP_5696	0.86	-0.6
5,151,858	+		PP_5696	0.86	+1.1
5,151,858	+		PP_5696	0.86	+0.6
5,151,895	+				+0.1
5,151,897	+				+0.5
5,151,897	+				+0.4
5,151,897	+				-1.9
5,151,897	+				+0.1
5,151,897	+				+0.9
5,151,897	+				-0.0
5,151,897	+				+0.3
5,151,897	+				+0.4
5,151,897	+				-0.7
5,151,897	+				-0.1
5,151,897	+				+0.9
5,151,897	+				+0.9
5,151,897	+				-0.2
5,151,897	+				-4.2
5,151,897	+				+0.0
5,151,897	+				+0.8
5,151,897	+				+0.4
5,151,898	-				-0.1
5,151,898	-				-0.7
5,151,898	-				+0.1
5,151,898	-				-1.1
5,151,898	-				-2.0
5,151,898	-				+0.7
5,151,898	-				-0.6
5,151,987	+				+0.2
5,151,988	-				-1.4
5,151,988	-				+0.7
5,151,988	-				-1.3
5,152,061	-				+0.3
5,152,088	+				-1.0
5,152,089	-				-0.1
5,152,089	-				+0.0
5,152,099	+				+0.8
5,152,099	+				-1.1
5,152,105	+				+1.2
5,152,143	+				+0.6
5,152,143	+				+0.3
5,152,173	+				+0.4
5,152,186	+				+1.6
5,152,186	+				+1.0
5,152,186	+				-1.1
5,152,187	-				+0.3
5,152,187	-				-1.7
5,152,187	-				+0.7
5,152,187	-				-0.4
5,152,212	+				-0.2
5,152,287	+				+0.2
5,152,287	+				+0.0
5,152,287	+				+0.1
5,152,287	+				-2.5
5,152,288	-				-0.2
5,152,288	-				-2.2
5,152,288	-				+0.6
5,152,298	-				+0.3
5,152,298	-				+0.7
5,152,298	-				-0.4
5,152,306	+				-0.0
5,152,307	-				-0.3
5,152,381	+				+1.4
5,152,382	-				+0.4
5,152,427	-				+0.5
5,152,427	-				-1.8
5,152,456	+				-0.1
5,152,456	+				-1.8
5,152,456	+				+0.9
5,152,456	+				-0.4