Experiment: P. putida South MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5691 and PP_5692 are separated by 49 nucleotides PP_5692 and PP_4468 are separated by 181 nucleotides PP_4468 and PP_t58 are separated by 319 nucleotides PP_t58 and PP_t57 are separated by 134 nucleotides PP_t57 and PP_4469 are separated by 110 nucleotides
PP_5691: PP_5691 - conserved protein of unknown function, at 5,073,675 to 5,074,121
_5691
PP_5692: PP_5692 - conserved protein of unknown function, at 5,074,171 to 5,074,563
_5692
PP_4468: PP_4468 - Transcriptional regulator, Cro/CI family, at 5,074,745 to 5,075,236
_4468
PP_t58: PP_t58 - tRNA-Arg, at 5,075,556 to 5,075,627
_t58
PP_t57: PP_t57 - tRNA-Arg, at 5,075,762 to 5,075,830
_t57
PP_4469: PP_4469 - ribose 1,5-bisphosphate phosphokinase, at 5,075,941 to 5,076,540
_4469
Position (kb) 5074
5075
5076 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5073.767 kb on + strand, within PP_5691 at 5073.767 kb on + strand, within PP_5691 at 5073.767 kb on + strand, within PP_5691 at 5073.767 kb on + strand, within PP_5691 at 5073.796 kb on - strand, within PP_5691 at 5073.837 kb on + strand, within PP_5691 at 5073.961 kb on - strand, within PP_5691 at 5074.008 kb on - strand, within PP_5691 at 5074.040 kb on + strand, within PP_5691 at 5074.040 kb on + strand, within PP_5691 at 5074.040 kb on + strand, within PP_5691 at 5074.040 kb on + strand, within PP_5691 at 5074.041 kb on - strand, within PP_5691 at 5074.041 kb on - strand, within PP_5691 at 5074.045 kb on - strand, within PP_5691 at 5074.045 kb on - strand, within PP_5691 at 5074.094 kb on + strand at 5074.113 kb on - strand at 5074.137 kb on + strand at 5074.138 kb on - strand at 5074.209 kb on + strand at 5074.209 kb on + strand at 5074.210 kb on - strand at 5074.236 kb on - strand, within PP_5692 at 5074.246 kb on - strand, within PP_5692 at 5074.281 kb on + strand, within PP_5692 at 5074.281 kb on + strand, within PP_5692 at 5074.281 kb on + strand, within PP_5692 at 5074.281 kb on + strand, within PP_5692 at 5074.282 kb on - strand, within PP_5692 at 5074.282 kb on - strand, within PP_5692 at 5074.282 kb on - strand, within PP_5692 at 5074.282 kb on - strand, within PP_5692 at 5074.282 kb on - strand, within PP_5692 at 5074.282 kb on - strand, within PP_5692 at 5074.282 kb on - strand, within PP_5692 at 5074.384 kb on + strand, within PP_5692 at 5074.385 kb on - strand, within PP_5692 at 5074.461 kb on + strand, within PP_5692 at 5074.461 kb on + strand, within PP_5692 at 5074.461 kb on + strand, within PP_5692 at 5074.462 kb on - strand, within PP_5692 at 5074.463 kb on + strand, within PP_5692 at 5074.464 kb on - strand, within PP_5692 at 5074.464 kb on - strand, within PP_5692 at 5074.464 kb on - strand, within PP_5692 at 5074.464 kb on - strand, within PP_5692 at 5074.492 kb on - strand, within PP_5692 at 5074.502 kb on - strand, within PP_5692 at 5074.615 kb on + strand at 5074.616 kb on - strand at 5074.630 kb on - strand at 5074.630 kb on - strand at 5074.721 kb on + strand at 5074.721 kb on + strand at 5074.721 kb on + strand at 5074.722 kb on - strand at 5074.722 kb on - strand at 5074.722 kb on - strand at 5074.722 kb on - strand at 5074.722 kb on - strand at 5074.722 kb on - strand at 5074.724 kb on - strand at 5074.724 kb on - strand at 5074.786 kb on - strand at 5074.786 kb on - strand at 5074.792 kb on - strand at 5074.840 kb on + strand, within PP_4468 at 5074.841 kb on - strand, within PP_4468 at 5074.841 kb on - strand, within PP_4468 at 5074.876 kb on + strand, within PP_4468 at 5074.876 kb on + strand, within PP_4468 at 5074.918 kb on - strand, within PP_4468 at 5074.983 kb on + strand, within PP_4468 at 5074.983 kb on + strand, within PP_4468 at 5075.037 kb on + strand, within PP_4468 at 5075.037 kb on + strand, within PP_4468 at 5075.038 kb on - strand, within PP_4468 at 5075.067 kb on + strand, within PP_4468 at 5075.067 kb on + strand at 5075.067 kb on + strand, within PP_4468 at 5075.067 kb on + strand, within PP_4468 at 5075.067 kb on + strand, within PP_4468 at 5075.068 kb on - strand, within PP_4468 at 5075.068 kb on - strand, within PP_4468 at 5075.099 kb on - strand, within PP_4468 at 5075.099 kb on - strand, within PP_4468 at 5075.099 kb on - strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.109 kb on + strand, within PP_4468 at 5075.110 kb on - strand, within PP_4468 at 5075.110 kb on - strand at 5075.110 kb on - strand, within PP_4468 at 5075.110 kb on - strand, within PP_4468 at 5075.110 kb on - strand, within PP_4468 at 5075.140 kb on + strand, within PP_4468 at 5075.140 kb on + strand, within PP_4468 at 5075.176 kb on - strand, within PP_4468 at 5075.234 kb on + strand at 5075.234 kb on + strand at 5075.264 kb on + strand at 5075.264 kb on + strand at 5075.264 kb on + strand at 5075.265 kb on - strand at 5075.346 kb on + strand at 5075.347 kb on - strand at 5075.347 kb on - strand at 5075.347 kb on - strand at 5075.364 kb on - strand at 5075.395 kb on + strand at 5075.395 kb on + strand at 5075.395 kb on + strand at 5075.396 kb on - strand at 5075.396 kb on - strand at 5075.404 kb on + strand at 5075.404 kb on + strand at 5075.405 kb on - strand at 5075.405 kb on - strand at 5075.405 kb on - strand at 5075.434 kb on + strand at 5075.584 kb on + strand, within PP_t58 at 5075.585 kb on - strand, within PP_t58 at 5075.619 kb on + strand, within PP_t58 at 5075.619 kb on + strand, within PP_t58 at 5075.619 kb on + strand, within PP_t58 at 5075.662 kb on + strand at 5075.663 kb on - strand at 5075.663 kb on - strand at 5075.717 kb on + strand at 5075.717 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.739 kb on + strand at 5075.740 kb on - strand at 5075.740 kb on - strand at 5075.740 kb on - strand at 5075.747 kb on + strand at 5075.747 kb on + strand at 5075.757 kb on + strand at 5075.758 kb on - strand at 5075.771 kb on + strand, within PP_t57 at 5075.771 kb on + strand, within PP_t57 at 5075.771 kb on + strand, within PP_t57 at 5075.772 kb on - strand, within PP_t57 at 5075.772 kb on - strand, within PP_t57 at 5075.772 kb on - strand, within PP_t57 at 5075.823 kb on - strand, within PP_t57 at 5075.834 kb on - strand at 5075.876 kb on + strand at 5075.877 kb on - strand at 5075.923 kb on + strand at 5075.924 kb on - strand at 5075.953 kb on + strand at 5075.954 kb on - strand at 5075.957 kb on - strand at 5075.957 kb on - strand at 5076.018 kb on + strand, within PP_4469 at 5076.200 kb on + strand, within PP_4469
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 10 remove 5,073,767 + PP_5691 0.21 +0.1 5,073,767 + PP_5691 0.21 +0.3 5,073,767 + PP_5691 0.21 -0.3 5,073,767 + PP_5691 0.21 +1.3 5,073,796 - PP_5691 0.27 -0.0 5,073,837 + PP_5691 0.36 -1.4 5,073,961 - PP_5691 0.64 -1.0 5,074,008 - PP_5691 0.74 -2.1 5,074,040 + PP_5691 0.82 +0.0 5,074,040 + PP_5691 0.82 -0.1 5,074,040 + PP_5691 0.82 -2.0 5,074,040 + PP_5691 0.82 -0.6 5,074,041 - PP_5691 0.82 +1.5 5,074,041 - PP_5691 0.82 +0.3 5,074,045 - PP_5691 0.83 +0.6 5,074,045 - PP_5691 0.83 -1.6 5,074,094 + -0.4 5,074,113 - +1.0 5,074,137 + -1.4 5,074,138 - +1.7 5,074,209 + +0.4 5,074,209 + +0.9 5,074,210 - -0.1 5,074,236 - PP_5692 0.17 +1.4 5,074,246 - PP_5692 0.19 +0.2 5,074,281 + PP_5692 0.28 +0.6 5,074,281 + PP_5692 0.28 -0.4 5,074,281 + PP_5692 0.28 +0.1 5,074,281 + PP_5692 0.28 -2.8 5,074,282 - PP_5692 0.28 -1.4 5,074,282 - PP_5692 0.28 +0.0 5,074,282 - PP_5692 0.28 -0.1 5,074,282 - PP_5692 0.28 +0.4 5,074,282 - PP_5692 0.28 -0.0 5,074,282 - PP_5692 0.28 -0.9 5,074,282 - PP_5692 0.28 -0.9 5,074,384 + PP_5692 0.54 +0.1 5,074,385 - PP_5692 0.54 +0.8 5,074,461 + PP_5692 0.74 -0.1 5,074,461 + PP_5692 0.74 +1.1 5,074,461 + PP_5692 0.74 -0.6 5,074,462 - PP_5692 0.74 +0.4 5,074,463 + PP_5692 0.74 -0.7 5,074,464 - PP_5692 0.75 +0.1 5,074,464 - PP_5692 0.75 +0.4 5,074,464 - PP_5692 0.75 +0.0 5,074,464 - PP_5692 0.75 +0.1 5,074,492 - PP_5692 0.82 -0.2 5,074,502 - PP_5692 0.84 +1.4 5,074,615 + -1.0 5,074,616 - +0.6 5,074,630 - -0.6 5,074,630 - +1.0 5,074,721 + -4.4 5,074,721 + +1.0 5,074,721 + -2.0 5,074,722 - -0.2 5,074,722 - +1.0 5,074,722 - +0.3 5,074,722 - -0.7 5,074,722 - -2.7 5,074,722 - -0.3 5,074,724 - -0.9 5,074,724 - +0.2 5,074,786 - +0.7 5,074,786 - -0.7 5,074,792 - -0.5 5,074,840 + PP_4468 0.19 +0.2 5,074,841 - PP_4468 0.20 -0.3 5,074,841 - PP_4468 0.20 -0.9 5,074,876 + PP_4468 0.27 -0.5 5,074,876 + PP_4468 0.27 -0.5 5,074,918 - PP_4468 0.35 -2.5 5,074,983 + PP_4468 0.48 +0.2 5,074,983 + PP_4468 0.48 -0.4 5,075,037 + PP_4468 0.59 -2.3 5,075,037 + PP_4468 0.59 -2.1 5,075,038 - PP_4468 0.60 -0.6 5,075,067 + PP_4468 0.65 -0.7 5,075,067 + -0.3 5,075,067 + PP_4468 0.65 +0.1 5,075,067 + PP_4468 0.65 -2.0 5,075,067 + PP_4468 0.65 +0.5 5,075,068 - PP_4468 0.66 -0.2 5,075,068 - PP_4468 0.66 -2.1 5,075,099 - PP_4468 0.72 -1.0 5,075,099 - PP_4468 0.72 -3.3 5,075,099 - PP_4468 0.72 +0.2 5,075,109 + PP_4468 0.74 -1.0 5,075,109 + PP_4468 0.74 -1.3 5,075,109 + PP_4468 0.74 -2.1 5,075,109 + PP_4468 0.74 +0.3 5,075,109 + PP_4468 0.74 -2.6 5,075,109 + PP_4468 0.74 -0.7 5,075,110 - PP_4468 0.74 +0.4 5,075,110 - +0.7 5,075,110 - PP_4468 0.74 +0.2 5,075,110 - PP_4468 0.74 -0.8 5,075,110 - PP_4468 0.74 +0.4 5,075,140 + PP_4468 0.80 +2.2 5,075,140 + PP_4468 0.80 -0.3 5,075,176 - PP_4468 0.88 +0.3 5,075,234 + +1.0 5,075,234 + +0.8 5,075,264 + -0.9 5,075,264 + -0.4 5,075,264 + -0.4 5,075,265 - +1.0 5,075,346 + +0.1 5,075,347 - +0.6 5,075,347 - -0.5 5,075,347 - -0.4 5,075,364 - -0.0 5,075,395 + +2.0 5,075,395 + -2.1 5,075,395 + -1.1 5,075,396 - -2.3 5,075,396 - +0.5 5,075,404 + -0.2 5,075,404 + -0.9 5,075,405 - -1.4 5,075,405 - +0.9 5,075,405 - -0.9 5,075,434 + -0.8 5,075,584 + PP_t58 0.39 +0.7 5,075,585 - PP_t58 0.40 -0.6 5,075,619 + PP_t58 0.88 +1.7 5,075,619 + PP_t58 0.88 +0.7 5,075,619 + PP_t58 0.88 -0.3 5,075,662 + +0.7 5,075,663 - +0.4 5,075,663 - -1.0 5,075,717 + -1.8 5,075,717 + -3.0 5,075,739 + -1.7 5,075,739 + -3.1 5,075,739 + -3.1 5,075,739 + -3.0 5,075,739 + -3.0 5,075,739 + -4.2 5,075,739 + -1.3 5,075,740 - +0.7 5,075,740 - +0.5 5,075,740 - -0.8 5,075,747 + +1.7 5,075,747 + -2.8 5,075,757 + -2.7 5,075,758 - +0.4 5,075,771 + PP_t57 0.13 -2.6 5,075,771 + PP_t57 0.13 -2.8 5,075,771 + PP_t57 0.13 -3.1 5,075,772 - PP_t57 0.14 -0.0 5,075,772 - PP_t57 0.14 +0.7 5,075,772 - PP_t57 0.14 -0.4 5,075,823 - PP_t57 0.88 +1.7 5,075,834 - +0.5 5,075,876 + -1.6 5,075,877 - -0.3 5,075,923 + -2.6 5,075,924 - +0.9 5,075,953 + +0.1 5,075,954 - -0.5 5,075,957 - +0.0 5,075,957 - -1.8 5,076,018 + PP_4469 0.13 -0.5 5,076,200 + PP_4469 0.43 +0.3
Or see this region's nucleotide sequence