Strain Fitness in Pseudomonas putida KT2440 around PP_3694

Experiment: P. putida South MOI 10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 10
4,210,656	+				+0.2
4,210,656	+				+0.6
4,210,690	+				-1.2
4,210,690	+				-2.3
4,210,691	-				+0.0
4,210,721	+				-1.3
4,210,721	+				+1.3
4,210,721	+				-1.6
4,210,722	-				+0.8
4,210,722	-				+1.4
4,210,729	+				-1.4
4,210,730	-				-1.2
4,210,773	-				+0.5
4,210,789	+				-2.2
4,210,789	+				-4.0
4,210,789	+				+0.3
4,210,790	-				-0.2
4,210,790	-				-2.0
4,210,790	-				+0.1
4,210,790	-				-3.1
4,210,790	-				+0.2
4,210,819	+				-2.3
4,210,820	-				-1.6
4,210,820	-				+0.6
4,210,843	-		PP_5621	0.18	-2.3
4,211,029	-		PP_5621	0.83	-3.5
4,211,029	-		PP_5621	0.83	-0.2
4,211,066	+				+0.4
4,211,066	+				+0.1
4,211,066	+				+0.7
4,211,093	-				+0.9
4,211,103	+				-0.3
4,211,116	+				-0.1
4,211,131	+				-3.6
4,211,164	-		PP_3693	0.10	+2.7
4,211,241	+		PP_3693	0.31	-0.4
4,211,250	-		PP_3693	0.34	-2.0
4,211,330	+		PP_3693	0.56	+2.0
4,211,331	-		PP_3693	0.56	-0.3
4,211,352	+		PP_3693	0.62	-2.1
4,211,352	+		PP_3693	0.62	+0.4
4,211,353	-		PP_3693	0.62	+0.7
4,211,492	+				-0.5
4,211,492	+				+1.2
4,211,493	-				+0.5
4,211,510	+				-0.2
4,211,511	-				+0.9
4,211,522	+				+1.4
4,211,620	+				-1.3
4,211,620	+				+0.4
4,211,621	-				-3.0
4,211,629	-				-3.7
4,211,629	-				-2.1
4,211,637	+				-0.6
4,211,637	+				-1.1
4,211,645	+				+0.4
4,211,678	-				-2.9
4,211,678	-				-0.3
4,211,678	-				-0.6
4,211,683	+				+0.8
4,211,683	+				+0.0
4,211,683	+				+0.4
4,211,688	-				-4.2
4,211,688	-				-2.0
4,211,748	+				-0.7
4,211,773	-		PP_3694	0.12	-1.3
4,211,788	-		PP_3694	0.14	-4.1
4,211,788	-		PP_3694	0.14	-1.6
4,211,788	-		PP_3694	0.14	+0.8
4,211,799	+		PP_3694	0.15	+0.0
4,211,800	-		PP_3694	0.15	-2.5
4,211,800	-		PP_3694	0.15	-1.6
4,211,835	+		PP_3694	0.19	+0.7
4,211,836	-		PP_3694	0.19	-2.7
4,211,836	-		PP_3694	0.19	-2.1
4,211,847	-		PP_3694	0.20	+0.4
4,211,857	+		PP_3694	0.21	+0.1
4,211,858	-		PP_3694	0.21	-0.2
4,211,858	-		PP_3694	0.21	-1.0
4,211,908	+		PP_3694	0.26	-0.8
4,211,932	+		PP_3694	0.29	+0.2
4,211,933	-		PP_3694	0.29	-1.1
4,211,933	-		PP_3694	0.29	-4.5
4,211,933	-		PP_3694	0.29	-1.2
4,211,933	-		PP_3694	0.29	-1.3
4,211,933	-		PP_3694	0.29	-0.2
4,211,943	+		PP_3694	0.30	+0.8
4,211,944	-		PP_3694	0.30	-1.6
4,211,958	-		PP_3694	0.31	-1.7
4,212,006	+		PP_3694	0.36	-1.0
4,212,007	-		PP_3694	0.37	-0.5
4,212,110	+		PP_3694	0.47	+0.1
4,212,134	+		PP_3694	0.50	+0.4
4,212,134	+		PP_3694	0.50	+0.2
4,212,144	+		PP_3694	0.51	+0.8
4,212,144	+		PP_3694	0.51	-1.9
4,212,144	+		PP_3694	0.51	+0.9
4,212,158	-		PP_3694	0.52	-1.2
4,212,158	-		PP_3694	0.52	-0.9
4,212,174	+		PP_3694	0.54	+1.5
4,212,175	-		PP_3694	0.54	-3.6
4,212,183	+		PP_3694	0.55	+0.2
4,212,184	-		PP_3694	0.55	-3.4
4,212,187	+		PP_3694	0.55	+1.2
4,212,228	+		PP_3694	0.60	+0.5
4,212,267	+		PP_3694	0.64	-1.2
4,212,267	+		PP_3694	0.64	+0.8
4,212,267	+		PP_3694	0.64	-1.7
4,212,267	+		PP_3694	0.64	+0.4
4,212,268	-		PP_3694	0.64	-4.2
4,212,268	-		PP_3694	0.64	-1.3
4,212,268	-		PP_3694	0.64	-1.6
4,212,268	-		PP_3694	0.64	-0.3
4,212,294	-		PP_3694	0.66	-1.7
4,212,301	+		PP_3694	0.67	-2.2
4,212,302	-		PP_3694	0.67	-2.2
4,212,340	+		PP_3694	0.71	+1.0
4,212,340	+		PP_3694	0.71	+0.3
4,212,341	-		PP_3694	0.71	-0.7
4,212,341	-		PP_3694	0.71	-0.9
4,212,393	-		PP_3694	0.77	-0.8
4,212,393	-		PP_3694	0.77	-1.9
4,212,404	+		PP_3694	0.78	+0.2
4,212,404	+		PP_3694	0.78	-0.7
4,212,404	+		PP_3694	0.78	-4.4
4,212,405	-		PP_3694	0.78	-0.1
4,212,405	-		PP_3694	0.78	-0.9
4,212,405	-		PP_3694	0.78	+1.0
4,212,466	+		PP_3694	0.84	-1.2
4,212,466	+		PP_3694	0.84	-3.7
4,212,466	+		PP_3694	0.84	-1.9
4,212,466	+		PP_3694	0.84	+1.1
4,212,466	+		PP_3694	0.84	-0.1
4,212,466	+		PP_3694	0.84	-0.1
4,212,467	-		PP_3694	0.84	-1.8
4,212,467	-		PP_3694	0.84	-1.0
4,212,471	-		PP_3694	0.85	-0.8
4,212,561	+				+0.3
4,212,562	-				+2.0
4,212,564	+				+0.6
4,212,565	-				-2.2
4,212,571	+				-0.8
4,212,616	-				-3.2
4,212,703	-		PP_3695	0.11	-1.2
4,212,719	+		PP_3695	0.13	+0.7
4,212,720	-		PP_3695	0.13	-0.6
4,212,720	-		PP_3695	0.13	-0.9
4,212,720	-		PP_3695	0.13	+0.7
4,212,776	+		PP_3695	0.18	+1.1
4,212,785	+		PP_3695	0.18	+0.3
4,212,786	-		PP_3695	0.18	-1.2
4,212,786	-		PP_3695	0.18	-1.9
4,212,786	-		PP_3695	0.18	-1.1
4,212,786	-		PP_3695	0.18	-0.6
4,212,795	+		PP_3695	0.19	-2.1
4,212,840	-		PP_3695	0.23	+0.3
4,212,849	-		PP_3695	0.24	-1.6
4,212,865	+		PP_3695	0.25	-0.5
4,212,927	+		PP_3695	0.31	+0.7
4,213,008	+		PP_3695	0.38	-1.6
4,213,008	+		PP_3695	0.38	-1.4
4,213,008	+		PP_3695	0.38	-0.7
4,213,009	-		PP_3695	0.38	+0.2
4,213,009	-		PP_3695	0.38	-0.1
4,213,009	-		PP_3695	0.38	-1.3
4,213,009	-		PP_3695	0.38	-2.2
4,213,009	-		PP_3695	0.38	-0.5
4,213,052	+		PP_3695	0.42	+0.8
4,213,103	+		PP_3695	0.46	-2.9
4,213,104	-		PP_3695	0.46	+0.6
4,213,104	-		PP_3695	0.46	+0.3
4,213,111	+		PP_3695	0.47	-0.1
4,213,159	+		PP_3695	0.51	+0.2
4,213,215	-		PP_3695	0.56	-2.0
4,213,215	-		PP_3695	0.56	-0.8
4,213,218	+		PP_3695	0.56	+0.7
4,213,219	-		PP_3695	0.56	-0.3
4,213,219	-		PP_3695	0.56	-0.6
4,213,272	+		PP_3695	0.61	+1.0
4,213,272	+		PP_3695	0.61	-0.8
4,213,285	-		PP_3695	0.62	-0.5
4,213,319	+				+1.7
4,213,319	+				+0.7
4,213,319	+		PP_3695	0.65	+0.1
4,213,320	-		PP_3695	0.65	-2.1
4,213,402	+		PP_3695	0.72	+1.6
4,213,402	+		PP_3695	0.72	-0.1
4,213,403	-		PP_3695	0.72	+0.4
4,213,403	-		PP_3695	0.72	-0.7
4,213,403	-		PP_3695	0.72	-2.8
4,213,403	-		PP_3695	0.72	-0.5
4,213,403	-		PP_3695	0.72	+0.2
4,213,413	+		PP_3695	0.73	-1.5
4,213,413	+		PP_3695	0.73	-1.5
4,213,414	-		PP_3695	0.73	-0.8
4,213,414	-		PP_3695	0.73	-1.5
4,213,424	+		PP_3695	0.74	+0.6
4,213,425	-		PP_3695	0.74	-1.4
4,213,425	-		PP_3695	0.74	-0.0
4,213,425	-		PP_3695	0.74	-1.7
4,213,425	-		PP_3695	0.74	+0.3
4,213,425	-		PP_3695	0.74	-0.8
4,213,425	-		PP_3695	0.74	-1.9
4,213,437	-		PP_3695	0.75	-3.9
4,213,476	+		PP_3695	0.78	+0.3
4,213,485	+		PP_3695	0.79	+0.2
4,213,604	+		PP_3695	0.89	-1.3
4,213,611	-				-0.8