Strain Fitness in Pseudomonas putida KT2440 around PP_1793

Experiment: P. putida South MOI 10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida South MOI 10
2,010,534	-		PP_1792	0.63	+0.4
2,010,573	+		PP_1792	0.65	-1.0
2,010,573	+				+2.8
2,010,573	+		PP_1792	0.65	+1.2
2,010,574	-		PP_1792	0.65	+0.5
2,010,574	-		PP_1792	0.65	-2.6
2,010,574	-		PP_1792	0.65	+0.2
2,010,574	-		PP_1792	0.65	+0.9
2,010,574	-		PP_1792	0.65	+1.1
2,010,579	+		PP_1792	0.65	+1.4
2,010,579	+		PP_1792	0.65	+1.4
2,010,579	+		PP_1792	0.65	+0.8
2,010,579	+		PP_1792	0.65	-4.4
2,010,617	+		PP_1792	0.66	+0.8
2,010,643	+		PP_1792	0.67	+1.4
2,010,643	+		PP_1792	0.67	+1.5
2,010,643	+		PP_1792	0.67	+0.1
2,010,643	+		PP_1792	0.67	-0.1
2,010,643	+		PP_1792	0.67	+1.5
2,010,643	+		PP_1792	0.67	-0.1
2,010,643	+		PP_1792	0.67	+0.9
2,010,644	-		PP_1792	0.67	+0.7
2,010,644	-		PP_1792	0.67	+1.9
2,010,644	-		PP_1792	0.67	+1.4
2,010,644	-		PP_1792	0.67	+1.6
2,010,644	-		PP_1792	0.67	+0.9
2,010,681	+		PP_1792	0.69	+1.1
2,010,800	+		PP_1792	0.74	+0.9
2,010,800	+		PP_1792	0.74	-0.5
2,010,801	-		PP_1792	0.74	-0.1
2,010,837	+		PP_1792	0.75	+0.2
2,010,885	+		PP_1792	0.77	+1.7
2,010,916	+		PP_1792	0.79	+1.3
2,010,938	+		PP_1792	0.80	+0.5
2,010,939	-		PP_1792	0.80	-2.9
2,010,969	-		PP_1792	0.81	+0.2
2,010,983	+		PP_1792	0.81	+0.2
2,010,983	+		PP_1792	0.81	-0.4
2,010,984	-		PP_1792	0.81	+1.2
2,010,984	-		PP_1792	0.81	-0.7
2,010,987	+		PP_1792	0.82	-0.2
2,010,987	+		PP_1792	0.82	+1.8
2,010,987	+		PP_1792	0.82	+1.2
2,010,988	-		PP_1792	0.82	+0.6
2,010,988	-		PP_1792	0.82	-0.1
2,011,049	+		PP_1792	0.84	+1.0
2,011,050	-		PP_1792	0.84	+2.2
2,011,056	+		PP_1792	0.84	+0.5
2,011,057	-		PP_1792	0.84	+0.0
2,011,068	+		PP_1792	0.85	-0.8
2,011,133	+		PP_1792	0.88	-1.9
2,011,134	-		PP_1792	0.88	-0.2
2,011,134	-		PP_1792	0.88	+1.1
2,011,136	+		PP_1792	0.88	-1.6
2,011,137	-		PP_1792	0.88	+1.4
2,011,137	-		PP_1792	0.88	+1.2
2,011,197	-				+0.1
2,011,316	+				+1.3
2,011,457	+				+0.1
2,011,466	+				-0.8
2,011,467	-				-1.3
2,011,467	-				-3.7
2,011,510	+				+1.4
2,011,511	-				+0.6
2,011,512	+				-1.1
2,011,512	+				+1.0
2,011,513	-				+0.3
2,011,513	-				+0.7
2,011,637	+				+1.3
2,011,647	-				+2.3
2,011,673	+				+2.6
2,011,714	+		PP_1793	0.11	+0.8
2,011,714	+		PP_1793	0.11	+1.0
2,011,777	+		PP_1793	0.13	+1.7
2,011,777	+		PP_1793	0.13	+2.3
2,011,777	+		PP_1793	0.13	+0.0
2,011,777	+		PP_1793	0.13	+0.1
2,011,777	+		PP_1793	0.13	+0.8
2,011,777	+		PP_1793	0.13	+0.2
2,011,778	-				+3.8
2,011,778	-		PP_1793	0.13	+2.7
2,011,778	-		PP_1793	0.13	-3.1
2,011,805	+		PP_1793	0.14	+1.2
2,011,805	+		PP_1793	0.14	+1.3
2,011,805	+		PP_1793	0.14	+1.9
2,011,806	-		PP_1793	0.14	+0.9
2,011,806	-		PP_1793	0.14	+0.8
2,011,806	-		PP_1793	0.14	+0.0
2,011,855	+				+1.6
2,011,894	+		PP_1793	0.18	-1.5
2,011,895	-		PP_1793	0.18	+2.1
2,011,895	-		PP_1793	0.18	+0.7
2,011,895	-		PP_1793	0.18	+1.6
2,011,914	-		PP_1793	0.19	+1.4
2,011,956	+		PP_1793	0.20	-3.6
2,011,956	+		PP_1793	0.20	-1.2
2,011,956	+		PP_1793	0.20	+0.6
2,011,956	+		PP_1793	0.20	+2.1
2,011,957	-		PP_1793	0.20	-0.1
2,011,957	-		PP_1793	0.20	+1.6
2,011,957	-		PP_1793	0.20	+1.2
2,011,960	+		PP_1793	0.20	+1.7
2,011,961	-		PP_1793	0.20	+0.7
2,011,961	-		PP_1793	0.20	-0.3
2,011,994	+		PP_1793	0.22	+1.1
2,011,994	+		PP_1793	0.22	-2.4
2,012,005	-		PP_1793	0.22	+0.2
2,012,096	+		PP_1793	0.26	-1.5
2,012,096	+		PP_1793	0.26	-0.5
2,012,097	-		PP_1793	0.26	+0.8
2,012,097	-		PP_1793	0.26	+1.9
2,012,097	-		PP_1793	0.26	+0.8
2,012,097	-		PP_1793	0.26	+1.4
2,012,097	-		PP_1793	0.26	+4.1
2,012,224	+		PP_1793	0.31	-0.1
2,012,225	-		PP_1793	0.31	+1.3
2,012,225	-		PP_1793	0.31	+1.4
2,012,255	+		PP_1793	0.32	+1.3
2,012,260	+		PP_1793	0.32	+1.9
2,012,260	+		PP_1793	0.32	-1.2
2,012,260	+		PP_1793	0.32	+1.8
2,012,260	+		PP_1793	0.32	+0.6
2,012,260	+		PP_1793	0.32	+1.4
2,012,261	-		PP_1793	0.32	+0.8
2,012,261	-		PP_1793	0.32	+1.1
2,012,261	-		PP_1793	0.32	+1.0
2,012,261	-		PP_1793	0.32	-0.4
2,012,261	-		PP_1793	0.32	+1.2
2,012,339	+		PP_1793	0.35	+1.1
2,012,339	+		PP_1793	0.35	+1.2
2,012,387	-		PP_1793	0.37	-0.7
2,012,388	+		PP_1793	0.37	+0.1
2,012,388	+		PP_1793	0.37	-0.4
2,012,388	+		PP_1793	0.37	+0.8
2,012,388	+		PP_1793	0.37	+1.7
2,012,388	+		PP_1793	0.37	+0.7
2,012,388	+		PP_1793	0.37	+0.4
2,012,389	-		PP_1793	0.37	+0.3
2,012,389	-		PP_1793	0.37	+0.7
2,012,389	-		PP_1793	0.37	-0.3
2,012,389	-		PP_1793	0.37	+1.6
2,012,426	-		PP_1793	0.38	-0.8
2,012,426	-		PP_1793	0.38	+0.3
2,012,426	-		PP_1793	0.38	+1.8
2,012,495	+		PP_1793	0.41	+0.9
2,012,495	+		PP_1793	0.41	+1.7
2,012,496	-		PP_1793	0.41	+0.9
2,012,496	-		PP_1793	0.41	+1.7
2,012,500	+		PP_1793	0.41	+1.0
2,012,500	+		PP_1793	0.41	+0.5
2,012,565	+		PP_1793	0.44	+0.8
2,012,580	+		PP_1793	0.44	+0.5
2,012,581	-		PP_1793	0.44	+0.1
2,012,624	+		PP_1793	0.46	-0.2
2,012,624	+		PP_1793	0.46	-0.1
2,012,624	+		PP_1793	0.46	+1.2
2,012,624	+		PP_1793	0.46	+1.2
2,012,624	+		PP_1793	0.46	+0.8
2,012,624	+		PP_1793	0.46	+1.2
2,012,625	-		PP_1793	0.46	+0.3
2,012,625	-		PP_1793	0.46	-0.1
2,012,625	-		PP_1793	0.46	+0.5
2,012,625	-		PP_1793	0.46	+1.1
2,012,625	-		PP_1793	0.46	+1.3
2,012,625	-		PP_1793	0.46	+0.9
2,012,625	-		PP_1793	0.46	+1.2
2,012,626	+		PP_1793	0.46	+0.9
2,012,626	+		PP_1793	0.46	-0.5
2,012,626	+		PP_1793	0.46	+1.3
2,012,626	+		PP_1793	0.46	-0.1
2,012,628	+		PP_1793	0.46	+1.4
2,012,629	-		PP_1793	0.46	+0.7
2,012,629	-		PP_1793	0.46	+1.1
2,012,797	+		PP_1793	0.53	+0.9
2,012,798	-		PP_1793	0.53	-0.2
2,012,849	+		PP_1793	0.55	+0.5
2,012,849	+		PP_1793	0.55	+1.6
2,012,850	-		PP_1793	0.55	+0.3
2,012,874	-		PP_1793	0.56	+0.4
2,012,937	-		PP_1793	0.58	+0.6
2,012,944	+		PP_1793	0.58	+2.0
2,012,944	+		PP_1793	0.58	+2.0
2,012,945	-		PP_1793	0.58	+0.4
2,013,166	+		PP_1793	0.67	+1.6
2,013,166	-		PP_1793	0.67	+1.0
2,013,167	-		PP_1793	0.67	-0.5
2,013,167	-		PP_1793	0.67	-0.2
2,013,207	-		PP_1793	0.69	+0.9
2,013,266	+		PP_1793	0.71	+0.7
2,013,266	+		PP_1793	0.71	+1.9
2,013,266	+		PP_1793	0.71	+2.1
2,013,266	+		PP_1793	0.71	+1.5
2,013,266	+		PP_1793	0.71	+1.2
2,013,267	-		PP_1793	0.71	+0.1
2,013,267	-		PP_1793	0.71	+1.0
2,013,267	-		PP_1793	0.71	+1.8
2,013,312	-		PP_1793	0.73	+0.4
2,013,312	-		PP_1793	0.73	+1.5
2,013,312	-		PP_1793	0.73	+0.5
2,013,438	+		PP_1793	0.77	-0.5
2,013,452	+		PP_1793	0.78	+0.9
2,013,453	-		PP_1793	0.78	+1.5
2,013,453	-		PP_1793	0.78	+0.9
2,013,453	-		PP_1793	0.78	-1.0
2,013,453	-		PP_1793	0.78	-0.8
2,013,453	-		PP_1793	0.78	+0.4
2,013,453	-		PP_1793	0.78	-1.4
2,013,457	+		PP_1793	0.78	+1.9
2,013,458	-		PP_1793	0.78	-1.0
2,013,458	-		PP_1793	0.78	+0.1
2,013,503	+		PP_1793	0.80	+1.4
2,013,580	+		PP_1793	0.83	+0.4
2,013,601	+		PP_1793	0.84	+2.1
2,013,602	-		PP_1793	0.84	+1.9
2,013,602	-		PP_1793	0.84	+0.6
2,013,624	-		PP_1793	0.85	+0.4
2,013,649	-		PP_1793	0.86	-0.2
2,013,695	+		PP_1793	0.87	+2.0
2,013,695	+		PP_1793	0.87	+1.7
2,013,696	-		PP_1793	0.87	-2.0
2,013,767	-				+1.3
2,013,779	+				+1.0
2,013,800	+				-1.5
2,013,800	+				+0.4
2,013,800	+				-0.6
2,013,848	+				+1.8
2,013,848	+				+2.1
2,013,861	+				+0.4
2,013,862	-				+0.2
2,013,862	-				+0.1
2,013,937	+				-1.1
2,013,937	+				+1.7
2,013,937	+				+1.8
2,013,937	+				+0.2
2,013,938	-				-0.1
2,013,938	-				+0.3
2,013,938	-				+0.7
2,013,938	-				-2.2
2,013,938	-				+0.5
2,013,998	-				+0.7
2,013,998	-				-0.3
2,014,010	-				-2.5
2,014,021	+				+0.7
2,014,021	+				+1.3
2,014,021	+				+0.7
2,014,021	+				+1.7
2,014,021	+				+0.7
2,014,021	+				+1.1
2,014,021	+				+0.7
2,014,022	-				-0.2
2,014,022	-				+1.4
2,014,022	-				-0.7
2,014,022	-				+1.0
2,014,022	-				+0.9
2,014,022	-				-0.0
2,014,031	+				+0.3
2,014,042	+				+1.0
2,014,042	+				+1.7
2,014,042	+				+2.2
2,014,042	+				+1.1
2,014,042	+				-1.5
2,014,063	+				+2.0
2,014,063	+				-1.2
2,014,063	+				+1.5
2,014,064	-				+1.3
2,014,064	-				-1.0
2,014,188	+				+1.8
2,014,189	-				+0.9
2,014,262	-		PP_1794	0.15	+1.0
2,014,262	-		PP_1794	0.15	+1.1
2,014,262	-		PP_1794	0.15	-0.2
2,014,365	-		PP_1794	0.22	+0.9
2,014,438	+		PP_1794	0.27	+0.7
2,014,438	+		PP_1794	0.27	-1.7
2,014,438	+		PP_1794	0.27	+1.7
2,014,438	+		PP_1794	0.27	+1.2
2,014,529	+		PP_1794	0.34	+0.7
2,014,530	-		PP_1794	0.34	-1.9
2,014,530	-		PP_1794	0.34	-2.4
2,014,557	+		PP_1794	0.35	+1.5
2,014,557	+		PP_1794	0.35	+1.2
2,014,558	-		PP_1794	0.36	+1.6
2,014,558	-		PP_1794	0.36	+0.7
2,014,629	-		PP_1794	0.40	+0.3
2,014,660	+		PP_1794	0.43	+0.9
2,014,686	-		PP_1794	0.44	+0.2
2,014,686	-		PP_1794	0.44	+0.7
2,014,841	+		PP_1794	0.55	+1.2
2,014,842	-		PP_1794	0.55	+0.5
2,014,842	-		PP_1794	0.55	+0.9
2,014,842	-		PP_1794	0.55	+0.9