Experiment: P. putida South MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0250 and PP_0251 are separated by 28 nucleotides PP_0251 and PP_0252 are separated by 120 nucleotides
PP_0250: PP_0250 - heat shock protein Hsp15 involved in ribosome recycling, at 304,741 to 305,142
_0250
PP_0251: PP_0251 - conserved membrane protein of unknown function, at 305,171 to 305,965
_0251
PP_0252: PP_0252 - 33 kDa chaperonin, at 306,086 to 306,985
_0252
Position (kb) 306
307 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 305.204 kb on + strand at 305.284 kb on - strand, within PP_0251 at 305.284 kb on - strand, within PP_0251 at 305.284 kb on - strand, within PP_0251 at 305.304 kb on - strand, within PP_0251 at 305.328 kb on + strand, within PP_0251 at 305.329 kb on - strand, within PP_0251 at 305.406 kb on + strand, within PP_0251 at 305.406 kb on + strand, within PP_0251 at 305.407 kb on - strand, within PP_0251 at 305.407 kb on - strand, within PP_0251 at 305.407 kb on - strand, within PP_0251 at 305.533 kb on - strand, within PP_0251 at 305.535 kb on + strand, within PP_0251 at 305.536 kb on - strand, within PP_0251 at 305.536 kb on - strand, within PP_0251 at 305.636 kb on + strand, within PP_0251 at 305.636 kb on + strand, within PP_0251 at 305.645 kb on + strand, within PP_0251 at 305.645 kb on + strand, within PP_0251 at 305.646 kb on - strand, within PP_0251 at 305.759 kb on + strand, within PP_0251 at 305.759 kb on + strand, within PP_0251 at 305.760 kb on - strand, within PP_0251 at 305.781 kb on + strand, within PP_0251 at 305.781 kb on + strand, within PP_0251 at 305.782 kb on - strand, within PP_0251 at 305.874 kb on - strand, within PP_0251 at 305.888 kb on + strand at 305.888 kb on + strand at 305.889 kb on - strand at 305.889 kb on - strand at 305.908 kb on + strand at 305.909 kb on - strand at 305.909 kb on - strand at 305.965 kb on + strand at 305.965 kb on + strand at 305.976 kb on + strand at 307.075 kb on + strand at 307.101 kb on + strand at 307.120 kb on - strand at 307.120 kb on - strand at 307.120 kb on - strand at 307.189 kb on + strand at 307.189 kb on + strand at 307.189 kb on + strand at 307.190 kb on - strand at 307.190 kb on - strand at 307.247 kb on + strand at 307.248 kb on - strand at 307.250 kb on + strand at 307.250 kb on + strand at 307.251 kb on - strand at 307.289 kb on + strand at 307.451 kb on - strand at 307.451 kb on - strand at 307.451 kb on - strand at 307.460 kb on + strand at 307.763 kb on + strand at 307.763 kb on + strand at 307.764 kb on - strand at 307.764 kb on - strand at 307.764 kb on - strand at 307.764 kb on - strand at 307.764 kb on - strand at 307.764 kb on - strand at 307.770 kb on + strand at 307.771 kb on - strand at 307.771 kb on - strand at 307.845 kb on + strand at 307.935 kb on + strand at 307.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 10 remove 305,204 + -0.5 305,284 - PP_0251 0.14 -1.1 305,284 - PP_0251 0.14 -1.8 305,284 - PP_0251 0.14 -2.5 305,304 - PP_0251 0.17 +1.0 305,328 + PP_0251 0.20 +0.5 305,329 - PP_0251 0.20 -3.7 305,406 + PP_0251 0.30 -3.9 305,406 + PP_0251 0.30 -1.5 305,407 - PP_0251 0.30 -0.9 305,407 - PP_0251 0.30 +0.3 305,407 - PP_0251 0.30 -0.2 305,533 - PP_0251 0.46 +1.0 305,535 + PP_0251 0.46 -1.7 305,536 - PP_0251 0.46 -2.7 305,536 - PP_0251 0.46 -1.3 305,636 + PP_0251 0.58 -0.8 305,636 + PP_0251 0.58 -1.3 305,645 + PP_0251 0.60 -1.4 305,645 + PP_0251 0.60 +0.5 305,646 - PP_0251 0.60 -3.3 305,759 + PP_0251 0.74 +0.4 305,759 + PP_0251 0.74 -2.0 305,760 - PP_0251 0.74 -2.2 305,781 + PP_0251 0.77 +0.2 305,781 + PP_0251 0.77 +0.3 305,782 - PP_0251 0.77 -1.2 305,874 - PP_0251 0.88 -1.0 305,888 + -3.0 305,888 + +0.1 305,889 - +0.2 305,889 - -2.7 305,908 + +0.4 305,909 - -0.8 305,909 - -2.0 305,965 + +0.6 305,965 + -1.8 305,976 + +1.1 307,075 + +1.1 307,101 + +1.0 307,120 - -2.2 307,120 - -4.6 307,120 - -5.7 307,189 + -5.4 307,189 + -2.2 307,189 + -1.9 307,190 - -2.4 307,190 - -3.3 307,247 + -4.1 307,248 - +1.7 307,250 + -5.4 307,250 + -5.1 307,251 - -4.7 307,289 + -2.8 307,451 - -3.2 307,451 - -4.9 307,451 - -3.9 307,460 + -5.2 307,763 + -4.7 307,763 + -4.7 307,764 - -4.1 307,764 - -4.7 307,764 - -4.5 307,764 - -4.6 307,764 - -2.8 307,764 - -5.2 307,770 + -3.1 307,771 - -4.4 307,771 - -1.8 307,845 + -1.1 307,935 + -3.3 307,936 - -2.5
Or see this region's nucleotide sequence