Experiment: P. putida South MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0041 and PP_0042 are separated by 202 nucleotides PP_0042 and PP_0043 are separated by 162 nucleotides PP_0043 and PP_0044 are separated by 24 nucleotides
PP_0041: PP_0041 - cadmium translocating P-type ATPase, at 43,527 to 45,524
_0041
PP_0042: PP_0042 - conserved exported protein of unknown function, at 45,727 to 46,050
_0042
PP_0043: PP_0043 - cation efflux system protein, at 46,213 to 49,374
_0043
PP_0044: PP_0044 - cobalt-zinc-cadmium resistance protein, at 49,399 to 50,649
_0044
Position (kb) 46
47
48
49
50 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 45.293 kb on + strand, within PP_0041 at 45.305 kb on + strand, within PP_0041 at 45.332 kb on - strand at 45.332 kb on - strand at 45.332 kb on - strand at 45.343 kb on + strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.473 kb on + strand at 45.474 kb on - strand at 45.525 kb on - strand at 45.525 kb on - strand at 45.595 kb on + strand at 45.602 kb on + strand at 45.602 kb on + strand at 45.646 kb on - strand at 45.815 kb on + strand, within PP_0042 at 45.815 kb on + strand, within PP_0042 at 45.815 kb on + strand, within PP_0042 at 45.816 kb on - strand, within PP_0042 at 45.828 kb on + strand, within PP_0042 at 45.829 kb on - strand, within PP_0042 at 45.868 kb on + strand, within PP_0042 at 45.868 kb on + strand, within PP_0042 at 45.869 kb on - strand, within PP_0042 at 45.881 kb on + strand, within PP_0042 at 45.882 kb on - strand, within PP_0042 at 45.882 kb on - strand, within PP_0042 at 45.962 kb on + strand, within PP_0042 at 45.963 kb on - strand, within PP_0042 at 46.089 kb on + strand at 46.090 kb on - strand at 46.214 kb on + strand at 46.215 kb on - strand at 46.219 kb on - strand at 46.268 kb on + strand at 46.268 kb on + strand at 46.268 kb on + strand at 46.283 kb on - strand at 46.525 kb on + strand at 46.526 kb on - strand at 46.526 kb on - strand at 46.779 kb on - strand, within PP_0043 at 47.023 kb on + strand, within PP_0043 at 47.024 kb on - strand, within PP_0043 at 47.024 kb on - strand, within PP_0043 at 47.053 kb on + strand, within PP_0043 at 47.053 kb on + strand, within PP_0043 at 47.053 kb on + strand, within PP_0043 at 47.053 kb on + strand, within PP_0043 at 47.053 kb on + strand, within PP_0043 at 47.053 kb on + strand, within PP_0043 at 47.054 kb on - strand, within PP_0043 at 47.054 kb on - strand, within PP_0043 at 47.054 kb on - strand, within PP_0043 at 47.056 kb on + strand, within PP_0043 at 47.056 kb on + strand, within PP_0043 at 47.056 kb on + strand, within PP_0043 at 47.056 kb on + strand, within PP_0043 at 47.056 kb on + strand, within PP_0043 at 47.056 kb on + strand, within PP_0043 at 47.057 kb on - strand, within PP_0043 at 47.057 kb on - strand, within PP_0043 at 47.057 kb on - strand, within PP_0043 at 47.057 kb on - strand, within PP_0043 at 47.057 kb on - strand, within PP_0043 at 47.057 kb on - strand, within PP_0043 at 47.057 kb on - strand, within PP_0043 at 47.057 kb on - strand, within PP_0043 at 47.084 kb on + strand, within PP_0043 at 47.084 kb on + strand, within PP_0043 at 47.085 kb on - strand, within PP_0043 at 47.085 kb on - strand, within PP_0043 at 47.328 kb on + strand, within PP_0043 at 47.328 kb on + strand, within PP_0043 at 47.329 kb on - strand, within PP_0043 at 47.384 kb on + strand, within PP_0043 at 47.384 kb on + strand, within PP_0043 at 47.385 kb on - strand, within PP_0043 at 47.385 kb on - strand, within PP_0043 at 47.457 kb on + strand, within PP_0043 at 47.490 kb on - strand, within PP_0043 at 47.490 kb on - strand, within PP_0043 at 47.490 kb on - strand, within PP_0043 at 47.703 kb on + strand, within PP_0043 at 47.704 kb on - strand, within PP_0043 at 47.799 kb on - strand, within PP_0043 at 47.868 kb on + strand, within PP_0043 at 47.868 kb on + strand, within PP_0043 at 47.868 kb on + strand, within PP_0043 at 47.868 kb on + strand, within PP_0043 at 47.868 kb on + strand, within PP_0043 at 47.869 kb on - strand, within PP_0043 at 47.869 kb on - strand, within PP_0043 at 47.988 kb on - strand, within PP_0043 at 47.988 kb on - strand, within PP_0043 at 48.096 kb on + strand, within PP_0043 at 48.096 kb on + strand, within PP_0043 at 48.096 kb on + strand, within PP_0043 at 48.096 kb on + strand, within PP_0043 at 48.096 kb on + strand, within PP_0043 at 48.096 kb on + strand, within PP_0043 at 48.096 kb on + strand, within PP_0043 at 48.096 kb on + strand, within PP_0043 at 48.096 kb on + strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.097 kb on - strand, within PP_0043 at 48.138 kb on + strand, within PP_0043 at 48.138 kb on + strand, within PP_0043 at 48.190 kb on + strand, within PP_0043 at 48.191 kb on - strand, within PP_0043 at 48.191 kb on - strand, within PP_0043 at 48.378 kb on + strand, within PP_0043 at 48.386 kb on + strand, within PP_0043 at 48.387 kb on - strand, within PP_0043 at 48.460 kb on + strand, within PP_0043 at 48.460 kb on + strand, within PP_0043 at 48.460 kb on + strand, within PP_0043 at 48.461 kb on - strand, within PP_0043 at 48.528 kb on + strand, within PP_0043 at 48.528 kb on + strand, within PP_0043 at 48.528 kb on + strand, within PP_0043 at 48.540 kb on + strand, within PP_0043 at 48.540 kb on + strand, within PP_0043 at 48.540 kb on + strand, within PP_0043 at 48.552 kb on + strand, within PP_0043 at 48.553 kb on - strand, within PP_0043 at 48.637 kb on - strand, within PP_0043 at 48.643 kb on + strand, within PP_0043 at 48.644 kb on - strand, within PP_0043 at 48.644 kb on - strand, within PP_0043 at 48.681 kb on + strand, within PP_0043 at 48.682 kb on - strand, within PP_0043 at 48.758 kb on + strand, within PP_0043 at 48.758 kb on + strand, within PP_0043 at 48.758 kb on + strand, within PP_0043 at 48.759 kb on - strand, within PP_0043 at 48.819 kb on + strand, within PP_0043 at 48.820 kb on - strand, within PP_0043 at 48.902 kb on + strand, within PP_0043 at 48.910 kb on - strand, within PP_0043 at 48.910 kb on - strand, within PP_0043 at 48.910 kb on - strand, within PP_0043 at 48.975 kb on + strand, within PP_0043 at 48.975 kb on + strand, within PP_0043 at 48.976 kb on - strand, within PP_0043 at 48.976 kb on - strand, within PP_0043 at 48.976 kb on - strand, within PP_0043 at 48.980 kb on - strand, within PP_0043 at 49.000 kb on + strand, within PP_0043 at 49.251 kb on + strand at 49.283 kb on + strand at 49.284 kb on - strand at 49.284 kb on - strand at 49.289 kb on + strand at 49.289 kb on + strand at 49.289 kb on + strand at 49.289 kb on + strand at 49.289 kb on + strand at 49.289 kb on + strand at 49.289 kb on + strand at 49.289 kb on + strand at 49.289 kb on + strand at 49.289 kb on + strand at 49.290 kb on - strand at 49.290 kb on - strand at 49.290 kb on - strand at 49.290 kb on - strand at 49.290 kb on - strand at 49.290 kb on - strand at 49.290 kb on - strand at 49.290 kb on - strand at 49.294 kb on - strand at 49.327 kb on + strand at 49.327 kb on + strand at 49.327 kb on + strand at 49.327 kb on + strand at 49.327 kb on + strand at 49.328 kb on - strand at 49.328 kb on - strand at 49.330 kb on + strand at 49.362 kb on + strand at 49.362 kb on + strand at 49.362 kb on + strand at 49.362 kb on + strand at 49.363 kb on - strand at 49.363 kb on - strand at 49.363 kb on - strand at 49.363 kb on - strand at 49.363 kb on - strand at 49.465 kb on + strand at 49.466 kb on - strand at 49.466 kb on - strand at 49.485 kb on + strand at 49.485 kb on + strand at 49.486 kb on - strand at 49.506 kb on - strand at 49.506 kb on - strand at 49.506 kb on - strand at 49.564 kb on + strand, within PP_0044 at 49.564 kb on + strand, within PP_0044 at 49.564 kb on + strand, within PP_0044 at 49.565 kb on - strand, within PP_0044 at 49.658 kb on - strand, within PP_0044 at 49.713 kb on + strand, within PP_0044 at 49.713 kb on + strand, within PP_0044 at 49.713 kb on + strand, within PP_0044 at 49.713 kb on + strand, within PP_0044 at 49.713 kb on + strand, within PP_0044 at 49.714 kb on - strand, within PP_0044 at 49.714 kb on - strand, within PP_0044 at 49.751 kb on + strand, within PP_0044 at 49.751 kb on + strand, within PP_0044 at 49.752 kb on - strand, within PP_0044 at 49.752 kb on - strand, within PP_0044 at 49.940 kb on - strand, within PP_0044 at 49.940 kb on - strand, within PP_0044 at 49.970 kb on + strand, within PP_0044 at 49.992 kb on + strand, within PP_0044 at 50.302 kb on - strand, within PP_0044
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 10 remove 45,293 + PP_0041 0.88 +0.7 45,305 + PP_0041 0.89 -0.7 45,332 - -0.6 45,332 - -0.4 45,332 - -0.6 45,343 + -0.7 45,344 - +0.6 45,344 - +0.7 45,344 - -0.9 45,344 - +1.3 45,473 + -0.6 45,474 - +0.2 45,525 - +1.1 45,525 - +0.6 45,595 + +0.8 45,602 + -1.0 45,602 + -2.0 45,646 - +0.8 45,815 + PP_0042 0.27 -1.7 45,815 + PP_0042 0.27 -0.2 45,815 + PP_0042 0.27 -0.5 45,816 - PP_0042 0.27 -5.0 45,828 + PP_0042 0.31 -1.5 45,829 - PP_0042 0.31 -2.7 45,868 + PP_0042 0.44 -0.2 45,868 + PP_0042 0.44 +0.4 45,869 - PP_0042 0.44 -1.0 45,881 + PP_0042 0.48 +0.3 45,882 - PP_0042 0.48 -0.5 45,882 - PP_0042 0.48 -0.8 45,962 + PP_0042 0.73 -4.5 45,963 - PP_0042 0.73 -4.3 46,089 + +0.1 46,090 - -3.9 46,214 + +0.8 46,215 - +0.6 46,219 - +0.8 46,268 + -0.4 46,268 + -0.9 46,268 + -0.5 46,283 - -0.2 46,525 + -1.9 46,526 - +1.5 46,526 - +0.2 46,779 - PP_0043 0.18 -1.7 47,023 + PP_0043 0.26 -0.7 47,024 - PP_0043 0.26 -0.6 47,024 - PP_0043 0.26 +1.0 47,053 + PP_0043 0.27 -0.1 47,053 + PP_0043 0.27 -1.0 47,053 + PP_0043 0.27 -1.9 47,053 + PP_0043 0.27 -0.8 47,053 + PP_0043 0.27 +0.1 47,053 + PP_0043 0.27 +0.8 47,054 - PP_0043 0.27 -2.7 47,054 - PP_0043 0.27 +0.1 47,054 - PP_0043 0.27 +0.5 47,056 + PP_0043 0.27 -0.0 47,056 + PP_0043 0.27 -1.3 47,056 + PP_0043 0.27 +0.6 47,056 + PP_0043 0.27 -0.1 47,056 + PP_0043 0.27 -0.9 47,056 + PP_0043 0.27 -0.8 47,057 - PP_0043 0.27 -0.2 47,057 - PP_0043 0.27 +0.2 47,057 - PP_0043 0.27 +0.1 47,057 - PP_0043 0.27 -2.9 47,057 - PP_0043 0.27 -0.8 47,057 - PP_0043 0.27 +0.8 47,057 - PP_0043 0.27 +0.2 47,057 - PP_0043 0.27 +0.2 47,084 + PP_0043 0.28 -1.9 47,084 + PP_0043 0.28 -2.4 47,085 - PP_0043 0.28 +0.9 47,085 - PP_0043 0.28 +0.6 47,328 + PP_0043 0.35 -1.2 47,328 + PP_0043 0.35 +0.6 47,329 - PP_0043 0.35 -2.7 47,384 + PP_0043 0.37 -0.7 47,384 + PP_0043 0.37 +0.8 47,385 - PP_0043 0.37 -1.2 47,385 - PP_0043 0.37 +0.7 47,457 + PP_0043 0.39 +0.7 47,490 - PP_0043 0.40 -1.2 47,490 - PP_0043 0.40 +0.3 47,490 - PP_0043 0.40 -1.6 47,703 + PP_0043 0.47 -0.2 47,704 - PP_0043 0.47 -1.0 47,799 - PP_0043 0.50 +0.4 47,868 + PP_0043 0.52 +1.2 47,868 + PP_0043 0.52 -1.7 47,868 + PP_0043 0.52 +0.5 47,868 + PP_0043 0.52 -0.7 47,868 + PP_0043 0.52 -2.8 47,869 - PP_0043 0.52 -0.4 47,869 - PP_0043 0.52 +0.3 47,988 - PP_0043 0.56 -0.4 47,988 - PP_0043 0.56 -0.6 48,096 + PP_0043 0.60 -1.1 48,096 + PP_0043 0.60 -0.4 48,096 + PP_0043 0.60 -0.6 48,096 + PP_0043 0.60 -0.4 48,096 + PP_0043 0.60 -3.1 48,096 + PP_0043 0.60 -2.1 48,096 + PP_0043 0.60 -1.0 48,096 + PP_0043 0.60 +0.7 48,096 + PP_0043 0.60 +0.2 48,097 - PP_0043 0.60 -0.2 48,097 - PP_0043 0.60 +0.2 48,097 - PP_0043 0.60 -0.5 48,097 - PP_0043 0.60 +0.3 48,097 - PP_0043 0.60 +0.5 48,097 - PP_0043 0.60 +0.7 48,097 - PP_0043 0.60 -2.7 48,097 - PP_0043 0.60 -1.8 48,097 - PP_0043 0.60 +0.5 48,097 - PP_0043 0.60 -1.5 48,097 - PP_0043 0.60 -0.5 48,097 - PP_0043 0.60 +0.0 48,097 - PP_0043 0.60 +0.3 48,097 - PP_0043 0.60 -1.0 48,138 + PP_0043 0.61 -2.5 48,138 + PP_0043 0.61 +0.8 48,190 + PP_0043 0.63 -1.0 48,191 - PP_0043 0.63 +0.0 48,191 - PP_0043 0.63 -2.0 48,378 + PP_0043 0.68 -0.2 48,386 + PP_0043 0.69 -3.1 48,387 - PP_0043 0.69 -2.1 48,460 + PP_0043 0.71 -0.3 48,460 + PP_0043 0.71 -1.7 48,460 + PP_0043 0.71 -0.2 48,461 - PP_0043 0.71 +1.3 48,528 + PP_0043 0.73 -1.8 48,528 + PP_0043 0.73 -1.8 48,528 + PP_0043 0.73 +0.1 48,540 + PP_0043 0.74 -0.9 48,540 + PP_0043 0.74 -0.8 48,540 + PP_0043 0.74 +0.1 48,552 + PP_0043 0.74 -2.3 48,553 - PP_0043 0.74 -2.6 48,637 - PP_0043 0.77 -0.2 48,643 + PP_0043 0.77 -0.5 48,644 - PP_0043 0.77 -0.0 48,644 - PP_0043 0.77 +0.1 48,681 + PP_0043 0.78 +1.0 48,682 - PP_0043 0.78 -0.3 48,758 + PP_0043 0.80 -0.2 48,758 + PP_0043 0.80 -0.0 48,758 + PP_0043 0.80 -0.7 48,759 - PP_0043 0.81 -0.6 48,819 + PP_0043 0.82 +0.8 48,820 - PP_0043 0.82 +0.4 48,902 + PP_0043 0.85 -1.5 48,910 - PP_0043 0.85 -0.7 48,910 - PP_0043 0.85 -0.6 48,910 - PP_0043 0.85 -0.2 48,975 + PP_0043 0.87 +0.1 48,975 + PP_0043 0.87 +0.8 48,976 - PP_0043 0.87 -3.8 48,976 - PP_0043 0.87 -0.5 48,976 - PP_0043 0.87 +0.8 48,980 - PP_0043 0.88 -0.0 49,000 + PP_0043 0.88 +1.2 49,251 + -3.2 49,283 + -1.2 49,284 - -0.3 49,284 - -0.4 49,289 + +0.8 49,289 + -1.5 49,289 + -0.3 49,289 + +0.9 49,289 + +0.2 49,289 + -1.2 49,289 + -0.8 49,289 + -2.5 49,289 + -0.0 49,289 + -1.7 49,290 - -0.2 49,290 - +0.3 49,290 - +0.3 49,290 - +1.2 49,290 - -3.3 49,290 - -0.1 49,290 - +0.8 49,290 - -3.0 49,294 - -2.9 49,327 + +1.3 49,327 + +0.3 49,327 + -0.9 49,327 + +0.9 49,327 + -0.1 49,328 - -1.8 49,328 - -0.5 49,330 + +0.5 49,362 + +0.5 49,362 + -1.9 49,362 + +0.4 49,362 + -0.8 49,363 - -0.2 49,363 - -0.9 49,363 - -1.3 49,363 - -0.3 49,363 - +1.0 49,465 + +1.4 49,466 - +0.5 49,466 - +0.2 49,485 + +0.9 49,485 + -0.5 49,486 - -2.1 49,506 - -0.6 49,506 - -1.4 49,506 - -1.4 49,564 + PP_0044 0.13 +0.8 49,564 + PP_0044 0.13 +0.0 49,564 + PP_0044 0.13 -1.0 49,565 - PP_0044 0.13 +0.1 49,658 - PP_0044 0.21 +0.4 49,713 + PP_0044 0.25 +0.2 49,713 + PP_0044 0.25 +1.7 49,713 + PP_0044 0.25 +0.1 49,713 + PP_0044 0.25 +0.7 49,713 + PP_0044 0.25 +0.8 49,714 - PP_0044 0.25 +0.4 49,714 - PP_0044 0.25 +1.1 49,751 + PP_0044 0.28 -0.9 49,751 + PP_0044 0.28 +0.4 49,752 - PP_0044 0.28 -0.2 49,752 - PP_0044 0.28 +0.3 49,940 - PP_0044 0.43 -1.0 49,940 - PP_0044 0.43 +0.3 49,970 + PP_0044 0.46 -0.6 49,992 + PP_0044 0.47 +0.4 50,302 - PP_0044 0.72 -0.4
Or see this region's nucleotide sequence