Strain Fitness in Pseudomonas putida KT2440 around PP_5113

Experiment: P. putida South MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5112 and PP_5113 overlap by 8 nucleotidesPP_5113 and PP_5114 overlap by 1 nucleotidesPP_5114 and PP_5115 are separated by 90 nucleotides PP_5112: PP_5112 - putative processin peptidase, at 5,832,375 to 5,833,730 _5112 PP_5113: PP_5113 - predicted Zn-dependent peptidases, at 5,833,723 to 5,835,213 _5113 PP_5114: PP_5114 - putative adenine methyltransferase, at 5,835,213 to 5,835,815 _5114 PP_5115: PP_5115 - putative Zinc protease, at 5,835,906 to 5,837,207 _5115 Position (kb) 5833 5834 5835 5836Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5832.984 kb on + strand, within PP_5112at 5832.984 kb on + strand, within PP_5112at 5832.985 kb on - strand, within PP_5112at 5832.996 kb on + strand, within PP_5112at 5833.071 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.162 kb on + strand, within PP_5112at 5833.163 kb on - strand, within PP_5112at 5833.163 kb on - strand, within PP_5112at 5833.163 kb on - strand, within PP_5112at 5833.188 kb on + strandat 5833.188 kb on + strand, within PP_5112at 5833.188 kb on + strand, within PP_5112at 5833.188 kb on + strand, within PP_5112at 5833.189 kb on - strand, within PP_5112at 5833.237 kb on + strand, within PP_5112at 5833.238 kb on - strand, within PP_5112at 5833.238 kb on - strand, within PP_5112at 5833.344 kb on + strand, within PP_5112at 5833.528 kb on - strand, within PP_5112at 5833.528 kb on - strand, within PP_5112at 5833.668 kb on + strandat 5833.668 kb on + strandat 5833.669 kb on - strandat 5833.669 kb on - strandat 5833.669 kb on - strandat 5833.669 kb on - strandat 5833.669 kb on - strandat 5833.702 kb on + strandat 5833.702 kb on + strandat 5833.702 kb on + strandat 5833.702 kb on + strandat 5833.702 kb on + strandat 5833.703 kb on - strandat 5833.703 kb on - strandat 5833.703 kb on - strandat 5833.703 kb on - strandat 5834.302 kb on + strand, within PP_5113at 5834.357 kb on - strand, within PP_5113at 5834.371 kb on + strand, within PP_5113at 5834.452 kb on + strand, within PP_5113at 5834.452 kb on + strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.453 kb on - strand, within PP_5113at 5834.455 kb on - strand, within PP_5113at 5834.472 kb on - strand, within PP_5113at 5834.767 kb on + strand, within PP_5113at 5834.768 kb on - strand, within PP_5113at 5834.853 kb on + strand, within PP_5113at 5834.854 kb on - strand, within PP_5113at 5834.854 kb on - strand, within PP_5113at 5834.854 kb on - strand, within PP_5113at 5834.854 kb on - strand, within PP_5113at 5834.888 kb on - strand, within PP_5113at 5835.010 kb on + strand, within PP_5113at 5835.011 kb on - strand, within PP_5113at 5835.211 kb on + strandat 5835.212 kb on - strandat 5835.387 kb on + strand, within PP_5114at 5835.387 kb on + strand, within PP_5114at 5835.426 kb on - strand, within PP_5114at 5835.705 kb on + strand, within PP_5114at 5835.706 kb on - strand, within PP_5114at 5835.792 kb on + strandat 5835.793 kb on - strandat 5835.793 kb on - strandat 5835.838 kb on + strandat 5835.838 kb on + strandat 5835.838 kb on + strandat 5835.838 kb on + strandat 5835.838 kb on + strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.880 kb on - strandat 5835.956 kb on + strandat 5835.957 kb on - strandat 5836.036 kb on + strandat 5836.036 kb on + strandat 5836.037 kb on - strand, within PP_5115at 5836.037 kb on - strand, within PP_5115at 5836.037 kb on - strand, within PP_5115at 5836.037 kb on - strand, within PP_5115at 5836.094 kb on - strand, within PP_5115at 5836.094 kb on - strand, within PP_5115at 5836.094 kb on - strand, within PP_5115at 5836.094 kb on - strand, within PP_5115at 5836.132 kb on - strand, within PP_5115at 5836.179 kb on + strand, within PP_5115at 5836.180 kb on - strand, within PP_5115at 5836.195 kb on + strand, within PP_5115at 5836.196 kb on - strand, within PP_5115

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida South MOI 10
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5,832,984 + PP_5112 0.45 +0.2
5,832,984 + PP_5112 0.45 +1.3
5,832,985 - PP_5112 0.45 +0.0
5,832,996 + PP_5112 0.46 -0.7
5,833,071 + PP_5112 0.51 -0.4
5,833,162 + PP_5112 0.58 +2.0
5,833,162 + PP_5112 0.58 -1.0
5,833,162 + PP_5112 0.58 +0.1
5,833,162 + PP_5112 0.58 +0.9
5,833,162 + PP_5112 0.58 +0.0
5,833,162 + PP_5112 0.58 -1.5
5,833,163 - PP_5112 0.58 -0.9
5,833,163 - PP_5112 0.58 -0.6
5,833,163 - PP_5112 0.58 -0.0
5,833,188 + +0.0
5,833,188 + PP_5112 0.60 +0.0
5,833,188 + PP_5112 0.60 +0.6
5,833,188 + PP_5112 0.60 -0.5
5,833,189 - PP_5112 0.60 -1.4
5,833,237 + PP_5112 0.64 +0.3
5,833,238 - PP_5112 0.64 -0.2
5,833,238 - PP_5112 0.64 +0.7
5,833,344 + PP_5112 0.71 -3.9
5,833,528 - PP_5112 0.85 +0.0
5,833,528 - PP_5112 0.85 +2.4
5,833,668 + -0.0
5,833,668 + +1.3
5,833,669 - -0.1
5,833,669 - +0.1
5,833,669 - -1.7
5,833,669 - -2.3
5,833,669 - -0.8
5,833,702 + -4.9
5,833,702 + +0.6
5,833,702 + +1.4
5,833,702 + -0.0
5,833,702 + +0.4
5,833,703 - -1.7
5,833,703 - -3.1
5,833,703 - -2.7
5,833,703 - +0.7
5,834,302 + PP_5113 0.39 +0.8
5,834,357 - PP_5113 0.43 +0.1
5,834,371 + PP_5113 0.43 +0.4
5,834,452 + PP_5113 0.49 -2.3
5,834,452 + PP_5113 0.49 -3.1
5,834,453 - PP_5113 0.49 -1.8
5,834,453 - PP_5113 0.49 -4.1
5,834,453 - PP_5113 0.49 -0.3
5,834,453 - PP_5113 0.49 +0.2
5,834,453 - PP_5113 0.49 +0.4
5,834,453 - PP_5113 0.49 +0.3
5,834,455 - PP_5113 0.49 +0.5
5,834,472 - PP_5113 0.50 +0.4
5,834,767 + PP_5113 0.70 -0.3
5,834,768 - PP_5113 0.70 -1.1
5,834,853 + PP_5113 0.76 -0.1
5,834,854 - PP_5113 0.76 +0.6
5,834,854 - PP_5113 0.76 -0.3
5,834,854 - PP_5113 0.76 -2.0
5,834,854 - PP_5113 0.76 -3.3
5,834,888 - PP_5113 0.78 -3.0
5,835,010 + PP_5113 0.86 +1.3
5,835,011 - PP_5113 0.86 -3.4
5,835,211 + -4.0
5,835,212 - -0.8
5,835,387 + PP_5114 0.29 -4.0
5,835,387 + PP_5114 0.29 -3.0
5,835,426 - PP_5114 0.35 -2.7
5,835,705 + PP_5114 0.82 -1.2
5,835,706 - PP_5114 0.82 -2.1
5,835,792 + -4.0
5,835,793 - -2.7
5,835,793 - -1.0
5,835,838 + +1.6
5,835,838 + -1.7
5,835,838 + -0.8
5,835,838 + +1.0
5,835,838 + +0.3
5,835,839 - +0.7
5,835,839 - -0.6
5,835,839 - -0.1
5,835,839 - -0.9
5,835,839 - -0.6
5,835,839 - -3.4
5,835,839 - -0.3
5,835,839 - -1.8
5,835,839 - -0.1
5,835,880 - +0.8
5,835,956 + -1.2
5,835,957 - +0.7
5,836,036 + +0.5
5,836,036 + -3.4
5,836,037 - PP_5115 0.10 -4.8
5,836,037 - PP_5115 0.10 -0.1
5,836,037 - PP_5115 0.10 +0.1
5,836,037 - PP_5115 0.10 +1.8
5,836,094 - PP_5115 0.14 +0.6
5,836,094 - PP_5115 0.14 +0.5
5,836,094 - PP_5115 0.14 -0.9
5,836,094 - PP_5115 0.14 -0.0
5,836,132 - PP_5115 0.17 +1.1
5,836,179 + PP_5115 0.21 +0.0
5,836,180 - PP_5115 0.21 -2.1
5,836,195 + PP_5115 0.22 +1.4
5,836,196 - PP_5115 0.22 -3.8

Or see this region's nucleotide sequence