Experiment: P. putida South MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0536 and PP_0537 are separated by 524 nucleotides PP_0537 and PP_0538 are separated by 182 nucleotides PP_0538 and PP_0539 are separated by 92 nucleotides
PP_0536: PP_0536 - conserved protein of unknown function, at 623,210 to 623,680
_0536
PP_0537: PP_0537 - putative transcriptional regulator, at 624,205 to 624,906
_0537
PP_0538: PP_0538 - inorganic pyrophosphatase, at 625,089 to 625,616
_0538
PP_0539: PP_0539 - glucose-regulated peptidase, at 625,709 to 626,524
_0539
Position (kb) 624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 623.241 kb on - strand at 623.422 kb on + strand, within PP_0536 at 623.491 kb on + strand, within PP_0536 at 623.492 kb on - strand, within PP_0536 at 623.492 kb on - strand, within PP_0536 at 623.552 kb on - strand, within PP_0536 at 623.594 kb on + strand, within PP_0536 at 623.595 kb on - strand, within PP_0536 at 623.683 kb on + strand at 623.684 kb on - strand at 623.697 kb on + strand at 623.857 kb on + strand at 623.857 kb on + strand at 623.858 kb on - strand at 623.860 kb on - strand at 623.977 kb on + strand at 624.025 kb on + strand at 624.025 kb on + strand at 624.025 kb on + strand at 624.025 kb on + strand at 624.026 kb on - strand at 624.047 kb on - strand at 624.141 kb on + strand at 624.142 kb on - strand at 624.142 kb on - strand at 624.158 kb on + strand at 624.158 kb on + strand at 624.158 kb on + strand at 624.158 kb on + strand at 624.158 kb on + strand at 624.158 kb on + strand at 624.159 kb on - strand at 624.159 kb on - strand at 624.159 kb on - strand at 624.159 kb on - strand at 624.159 kb on - strand at 624.159 kb on - strand at 624.159 kb on - strand at 624.159 kb on - strand at 624.293 kb on + strand, within PP_0537 at 624.293 kb on + strand, within PP_0537 at 624.294 kb on - strand, within PP_0537 at 624.308 kb on + strand, within PP_0537 at 624.309 kb on - strand, within PP_0537 at 624.309 kb on - strand, within PP_0537 at 624.335 kb on + strand, within PP_0537 at 624.335 kb on + strand, within PP_0537 at 624.335 kb on + strand, within PP_0537 at 624.335 kb on + strand, within PP_0537 at 624.336 kb on + strand, within PP_0537 at 624.336 kb on - strand, within PP_0537 at 624.401 kb on + strand, within PP_0537 at 624.451 kb on - strand, within PP_0537 at 624.602 kb on + strand, within PP_0537 at 624.602 kb on + strand, within PP_0537 at 624.602 kb on + strand, within PP_0537 at 624.602 kb on + strand, within PP_0537 at 624.602 kb on + strand, within PP_0537 at 624.603 kb on - strand, within PP_0537 at 624.603 kb on - strand, within PP_0537 at 624.603 kb on - strand, within PP_0537 at 624.603 kb on - strand, within PP_0537 at 624.603 kb on - strand, within PP_0537 at 624.603 kb on - strand, within PP_0537 at 624.648 kb on + strand, within PP_0537 at 624.986 kb on + strand at 624.986 kb on + strand at 624.999 kb on + strand at 624.999 kb on + strand at 624.999 kb on + strand at 625.000 kb on - strand at 625.000 kb on - strand at 625.009 kb on + strand at 625.658 kb on - strand at 625.658 kb on - strand at 625.660 kb on - strand at 625.660 kb on - strand at 625.783 kb on - strand at 625.783 kb on - strand at 625.803 kb on + strand, within PP_0539 at 625.803 kb on + strand, within PP_0539 at 625.803 kb on + strand, within PP_0539 at 625.804 kb on - strand, within PP_0539 at 625.816 kb on - strand, within PP_0539 at 625.844 kb on - strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.897 kb on - strand, within PP_0539
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 10 remove 623,241 - +0.8 623,422 + PP_0536 0.45 +1.5 623,491 + PP_0536 0.60 +0.4 623,492 - PP_0536 0.60 +0.7 623,492 - PP_0536 0.60 +0.2 623,552 - PP_0536 0.73 -0.9 623,594 + PP_0536 0.82 +0.4 623,595 - PP_0536 0.82 +0.4 623,683 + +1.3 623,684 - -1.3 623,697 + +0.4 623,857 + -0.2 623,857 + +0.2 623,858 - -3.6 623,860 - +1.5 623,977 + -1.0 624,025 + -2.0 624,025 + -3.2 624,025 + +1.0 624,025 + -3.4 624,026 - -0.7 624,047 - +0.8 624,141 + +0.9 624,142 - -0.7 624,142 - -0.8 624,158 + +4.4 624,158 + +0.9 624,158 + -1.5 624,158 + -1.9 624,158 + -1.9 624,158 + -3.6 624,159 - +1.3 624,159 - -1.1 624,159 - -3.0 624,159 - -0.3 624,159 - +0.9 624,159 - -0.8 624,159 - +0.2 624,159 - +2.0 624,293 + PP_0537 0.13 +2.0 624,293 + PP_0537 0.13 -0.7 624,294 - PP_0537 0.13 +0.9 624,308 + PP_0537 0.15 +0.5 624,309 - PP_0537 0.15 -1.5 624,309 - PP_0537 0.15 +0.5 624,335 + PP_0537 0.19 +0.4 624,335 + PP_0537 0.19 +0.5 624,335 + PP_0537 0.19 +1.2 624,335 + PP_0537 0.19 +2.0 624,336 + PP_0537 0.19 +1.3 624,336 - PP_0537 0.19 +0.1 624,401 + PP_0537 0.28 +2.8 624,451 - PP_0537 0.35 +0.2 624,602 + PP_0537 0.57 -0.1 624,602 + PP_0537 0.57 +0.8 624,602 + PP_0537 0.57 +2.2 624,602 + PP_0537 0.57 +1.5 624,602 + PP_0537 0.57 +1.4 624,603 - PP_0537 0.57 +1.9 624,603 - PP_0537 0.57 -2.3 624,603 - PP_0537 0.57 +1.1 624,603 - PP_0537 0.57 -1.0 624,603 - PP_0537 0.57 +0.6 624,603 - PP_0537 0.57 -1.4 624,648 + PP_0537 0.63 -1.4 624,986 + +0.9 624,986 + +1.8 624,999 + +0.2 624,999 + -3.6 624,999 + -3.0 625,000 - -0.6 625,000 - +0.3 625,009 + +0.8 625,658 - -1.0 625,658 - +2.2 625,660 - -3.3 625,660 - +1.6 625,783 - -1.4 625,783 - +0.5 625,803 + PP_0539 0.12 -0.7 625,803 + PP_0539 0.12 +1.1 625,803 + PP_0539 0.12 +0.3 625,804 - PP_0539 0.12 +0.3 625,816 - PP_0539 0.13 -1.1 625,844 - PP_0539 0.17 -0.3 625,896 + PP_0539 0.23 +0.5 625,896 + PP_0539 0.23 +1.1 625,896 + PP_0539 0.23 +0.5 625,896 + PP_0539 0.23 -3.5 625,897 - PP_0539 0.23 -0.5
Or see this region's nucleotide sequence