Experiment: P. putida South MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0048 and PP_5423 are separated by 101 nucleotides PP_5423 and PP_0049 are separated by 189 nucleotides PP_0049 and PP_5424 are separated by 12 nucleotides
PP_0048: PP_0048 - conserved protein of unknown function, at 55,019 to 55,342
_0048
PP_5423: PP_5423 - conserved membrane protein of unknown function, at 55,444 to 55,971
_5423
PP_0049: PP_0049 - conserved protein of unknown function, at 56,161 to 57,627
_0049
PP_5424: PP_5424 - conserved protein of unknown function, at 57,640 to 58,089
_5424
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 55.214 kb on + strand, within PP_0048 at 55.377 kb on - strand at 55.465 kb on - strand at 55.537 kb on + strand, within PP_5423 at 55.867 kb on - strand, within PP_5423 at 55.877 kb on - strand, within PP_5423 at 55.981 kb on + strand at 55.981 kb on + strand at 55.982 kb on - strand at 55.993 kb on + strand at 56.007 kb on - strand at 56.126 kb on - strand at 56.126 kb on - strand at 56.214 kb on + strand at 56.251 kb on + strand at 56.251 kb on + strand at 56.258 kb on - strand at 56.293 kb on + strand at 56.320 kb on + strand, within PP_0049 at 56.331 kb on + strand, within PP_0049 at 56.344 kb on + strand, within PP_0049 at 56.344 kb on + strand, within PP_0049 at 56.345 kb on - strand, within PP_0049 at 56.345 kb on - strand, within PP_0049 at 56.345 kb on - strand, within PP_0049 at 56.345 kb on - strand, within PP_0049 at 56.352 kb on + strand, within PP_0049 at 56.365 kb on + strand, within PP_0049 at 56.394 kb on - strand, within PP_0049 at 56.399 kb on + strand, within PP_0049 at 56.421 kb on - strand, within PP_0049 at 56.434 kb on + strand, within PP_0049 at 56.435 kb on - strand, within PP_0049 at 56.504 kb on + strand, within PP_0049 at 56.504 kb on + strand, within PP_0049 at 56.504 kb on + strand, within PP_0049 at 56.504 kb on + strand, within PP_0049 at 56.505 kb on - strand, within PP_0049 at 56.505 kb on - strand, within PP_0049 at 56.518 kb on + strand, within PP_0049 at 56.519 kb on - strand, within PP_0049 at 56.612 kb on - strand, within PP_0049 at 56.616 kb on + strand, within PP_0049 at 56.616 kb on + strand, within PP_0049 at 56.617 kb on - strand, within PP_0049 at 56.617 kb on - strand, within PP_0049 at 56.617 kb on - strand, within PP_0049 at 56.620 kb on + strand at 56.620 kb on + strand, within PP_0049 at 56.621 kb on - strand, within PP_0049 at 56.641 kb on + strand, within PP_0049 at 56.668 kb on + strand, within PP_0049 at 56.668 kb on + strand, within PP_0049 at 56.669 kb on - strand, within PP_0049 at 56.669 kb on - strand, within PP_0049 at 56.714 kb on + strand, within PP_0049 at 56.714 kb on + strand, within PP_0049 at 56.714 kb on + strand, within PP_0049 at 56.714 kb on + strand, within PP_0049 at 56.714 kb on + strand, within PP_0049 at 56.720 kb on + strand, within PP_0049 at 56.720 kb on + strand, within PP_0049 at 56.720 kb on + strand, within PP_0049 at 56.720 kb on + strand, within PP_0049 at 56.721 kb on - strand, within PP_0049 at 56.796 kb on + strand, within PP_0049 at 56.796 kb on + strand, within PP_0049 at 56.822 kb on + strand, within PP_0049 at 56.991 kb on + strand, within PP_0049 at 56.992 kb on - strand, within PP_0049 at 56.992 kb on - strand, within PP_0049 at 56.992 kb on - strand, within PP_0049 at 57.021 kb on + strand, within PP_0049 at 57.022 kb on - strand, within PP_0049 at 57.064 kb on + strand, within PP_0049 at 57.064 kb on + strand, within PP_0049 at 57.064 kb on + strand, within PP_0049 at 57.065 kb on - strand, within PP_0049 at 57.065 kb on - strand, within PP_0049 at 57.065 kb on - strand, within PP_0049 at 57.065 kb on - strand, within PP_0049 at 57.065 kb on - strand, within PP_0049 at 57.149 kb on + strand, within PP_0049 at 57.150 kb on - strand, within PP_0049 at 57.150 kb on - strand, within PP_0049 at 57.150 kb on - strand, within PP_0049 at 57.150 kb on - strand, within PP_0049 at 57.150 kb on - strand, within PP_0049 at 57.178 kb on - strand, within PP_0049 at 57.197 kb on - strand, within PP_0049 at 57.229 kb on - strand, within PP_0049 at 57.294 kb on + strand, within PP_0049 at 57.294 kb on + strand, within PP_0049 at 57.296 kb on + strand, within PP_0049 at 57.297 kb on - strand, within PP_0049 at 57.297 kb on - strand, within PP_0049 at 57.423 kb on + strand, within PP_0049 at 57.463 kb on - strand, within PP_0049 at 57.527 kb on - strand at 57.637 kb on + strand at 57.637 kb on + strand at 57.637 kb on + strand at 57.637 kb on + strand at 57.638 kb on - strand at 57.638 kb on - strand at 57.641 kb on + strand at 57.641 kb on + strand at 57.641 kb on + strand at 57.642 kb on - strand at 57.782 kb on + strand, within PP_5424 at 57.783 kb on - strand, within PP_5424 at 57.783 kb on - strand, within PP_5424 at 57.917 kb on + strand, within PP_5424 at 57.917 kb on + strand, within PP_5424 at 57.918 kb on - strand, within PP_5424 at 57.918 kb on - strand, within PP_5424 at 57.961 kb on + strand, within PP_5424 at 57.961 kb on + strand, within PP_5424 at 57.961 kb on + strand, within PP_5424 at 57.962 kb on - strand, within PP_5424 at 57.962 kb on - strand, within PP_5424 at 57.962 kb on - strand, within PP_5424 at 57.962 kb on - strand, within PP_5424 at 57.969 kb on + strand, within PP_5424 at 57.969 kb on + strand, within PP_5424 at 57.969 kb on + strand, within PP_5424 at 57.969 kb on + strand, within PP_5424 at 57.970 kb on - strand, within PP_5424 at 57.970 kb on - strand, within PP_5424 at 57.970 kb on - strand, within PP_5424 at 57.970 kb on - strand, within PP_5424 at 57.970 kb on - strand, within PP_5424 at 57.973 kb on + strand, within PP_5424 at 57.973 kb on + strand, within PP_5424 at 57.973 kb on + strand, within PP_5424 at 57.973 kb on + strand, within PP_5424 at 58.016 kb on - strand, within PP_5424 at 58.016 kb on - strand, within PP_5424 at 58.082 kb on + strand at 58.082 kb on + strand at 58.082 kb on + strand at 58.082 kb on + strand at 58.082 kb on + strand at 58.082 kb on + strand at 58.083 kb on - strand at 58.083 kb on - strand at 58.083 kb on - strand at 58.083 kb on - strand at 58.083 kb on - strand at 58.083 kb on - strand at 58.164 kb on + strand at 58.164 kb on + strand at 58.165 kb on - strand at 58.168 kb on + strand at 58.169 kb on - strand at 58.192 kb on + strand at 58.192 kb on + strand at 58.192 kb on + strand at 58.253 kb on - strand at 58.266 kb on - strand at 58.451 kb on + strand at 58.451 kb on + strand at 58.452 kb on - strand at 58.501 kb on + strand at 58.501 kb on + strand at 58.502 kb on - strand at 58.502 kb on - strand at 58.502 kb on - strand at 58.508 kb on + strand at 58.508 kb on + strand at 58.508 kb on + strand at 58.508 kb on + strand at 58.509 kb on - strand at 58.509 kb on - strand at 58.509 kb on - strand at 58.526 kb on - strand at 58.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida South MOI 10 remove 55,214 + PP_0048 0.60 -0.1 55,377 - +0.9 55,465 - +1.4 55,537 + PP_5423 0.18 -0.1 55,867 - PP_5423 0.80 +0.3 55,877 - PP_5423 0.82 +0.2 55,981 + +1.2 55,981 + +0.2 55,982 - +1.5 55,993 + +0.0 56,007 - -0.2 56,126 - +1.4 56,126 - -0.6 56,214 + -1.3 56,251 + +1.4 56,251 + -1.0 56,258 - +0.9 56,293 + -2.3 56,320 + PP_0049 0.11 -0.2 56,331 + PP_0049 0.12 -1.3 56,344 + PP_0049 0.12 -0.1 56,344 + PP_0049 0.12 -2.5 56,345 - PP_0049 0.13 +0.5 56,345 - PP_0049 0.13 +0.3 56,345 - PP_0049 0.13 -0.0 56,345 - PP_0049 0.13 -1.6 56,352 + PP_0049 0.13 -0.6 56,365 + PP_0049 0.14 +2.1 56,394 - PP_0049 0.16 -0.5 56,399 + PP_0049 0.16 -0.2 56,421 - PP_0049 0.18 -0.5 56,434 + PP_0049 0.19 -1.3 56,435 - PP_0049 0.19 -0.7 56,504 + PP_0049 0.23 -1.8 56,504 + PP_0049 0.23 -0.5 56,504 + PP_0049 0.23 +0.0 56,504 + PP_0049 0.23 +1.5 56,505 - PP_0049 0.23 -0.9 56,505 - PP_0049 0.23 -1.8 56,518 + PP_0049 0.24 -0.1 56,519 - PP_0049 0.24 +0.1 56,612 - PP_0049 0.31 -1.1 56,616 + PP_0049 0.31 -0.9 56,616 + PP_0049 0.31 -0.3 56,617 - PP_0049 0.31 +0.2 56,617 - PP_0049 0.31 -0.6 56,617 - PP_0049 0.31 +0.5 56,620 + +1.8 56,620 + PP_0049 0.31 +0.9 56,621 - PP_0049 0.31 -1.2 56,641 + PP_0049 0.33 +0.4 56,668 + PP_0049 0.35 -0.8 56,668 + PP_0049 0.35 +0.0 56,669 - PP_0049 0.35 +0.4 56,669 - PP_0049 0.35 +0.5 56,714 + PP_0049 0.38 +0.7 56,714 + PP_0049 0.38 -0.3 56,714 + PP_0049 0.38 +0.4 56,714 + PP_0049 0.38 -0.5 56,714 + PP_0049 0.38 +0.3 56,720 + PP_0049 0.38 -0.6 56,720 + PP_0049 0.38 +0.1 56,720 + PP_0049 0.38 +0.2 56,720 + PP_0049 0.38 +0.6 56,721 - PP_0049 0.38 +0.5 56,796 + PP_0049 0.43 +0.3 56,796 + PP_0049 0.43 +0.7 56,822 + PP_0049 0.45 +1.8 56,991 + PP_0049 0.57 -1.1 56,992 - PP_0049 0.57 +0.8 56,992 - PP_0049 0.57 -2.8 56,992 - PP_0049 0.57 -1.9 57,021 + PP_0049 0.59 -0.6 57,022 - PP_0049 0.59 +1.1 57,064 + PP_0049 0.62 -0.9 57,064 + PP_0049 0.62 +0.7 57,064 + PP_0049 0.62 +0.5 57,065 - PP_0049 0.62 +1.1 57,065 - PP_0049 0.62 -1.4 57,065 - PP_0049 0.62 -2.0 57,065 - PP_0049 0.62 +0.1 57,065 - PP_0049 0.62 -1.1 57,149 + PP_0049 0.67 -0.7 57,150 - PP_0049 0.67 -2.0 57,150 - PP_0049 0.67 -1.5 57,150 - PP_0049 0.67 -0.4 57,150 - PP_0049 0.67 +0.2 57,150 - PP_0049 0.67 -2.3 57,178 - PP_0049 0.69 -3.9 57,197 - PP_0049 0.71 -1.0 57,229 - PP_0049 0.73 +0.4 57,294 + PP_0049 0.77 +0.7 57,294 + PP_0049 0.77 -1.1 57,296 + PP_0049 0.77 -1.9 57,297 - PP_0049 0.77 +0.5 57,297 - PP_0049 0.77 -0.3 57,423 + PP_0049 0.86 +1.9 57,463 - PP_0049 0.89 -1.2 57,527 - +0.1 57,637 + +1.1 57,637 + +0.4 57,637 + +2.4 57,637 + -3.1 57,638 - +0.4 57,638 - -0.5 57,641 + +0.3 57,641 + -2.4 57,641 + -0.6 57,642 - -0.3 57,782 + PP_5424 0.32 +1.0 57,783 - PP_5424 0.32 +1.1 57,783 - PP_5424 0.32 -4.4 57,917 + PP_5424 0.62 -1.3 57,917 + PP_5424 0.62 +1.3 57,918 - PP_5424 0.62 +0.8 57,918 - PP_5424 0.62 +1.3 57,961 + PP_5424 0.71 -0.7 57,961 + PP_5424 0.71 -0.8 57,961 + PP_5424 0.71 -2.6 57,962 - PP_5424 0.72 -1.6 57,962 - PP_5424 0.72 +0.3 57,962 - PP_5424 0.72 -0.5 57,962 - PP_5424 0.72 +0.2 57,969 + PP_5424 0.73 +0.3 57,969 + PP_5424 0.73 -0.8 57,969 + PP_5424 0.73 +0.3 57,969 + PP_5424 0.73 +0.0 57,970 - PP_5424 0.73 +1.5 57,970 - PP_5424 0.73 +1.6 57,970 - PP_5424 0.73 +1.2 57,970 - PP_5424 0.73 +0.4 57,970 - PP_5424 0.73 -4.1 57,973 + PP_5424 0.74 +0.5 57,973 + PP_5424 0.74 -0.2 57,973 + PP_5424 0.74 +0.6 57,973 + PP_5424 0.74 +0.5 58,016 - PP_5424 0.84 +0.2 58,016 - PP_5424 0.84 +0.9 58,082 + -4.0 58,082 + +0.6 58,082 + -0.6 58,082 + -0.1 58,082 + -0.2 58,082 + +0.0 58,083 - +0.7 58,083 - +0.9 58,083 - +0.9 58,083 - +0.5 58,083 - -1.1 58,083 - +0.6 58,164 + -0.4 58,164 + -0.5 58,165 - +0.7 58,168 + +0.2 58,169 - -4.1 58,192 + +0.8 58,192 + -1.2 58,192 + +2.8 58,253 - +0.2 58,266 - +0.4 58,451 + -0.7 58,451 + +0.2 58,452 - +0.5 58,501 + -1.1 58,501 + -0.1 58,502 - +0.1 58,502 - -1.9 58,502 - +0.7 58,508 + +0.1 58,508 + -0.4 58,508 + -0.4 58,508 + +0.7 58,509 - -1.9 58,509 - -0.4 58,509 - +2.4 58,526 - -0.5 58,607 - +0.5
Or see this region's nucleotide sequence