Strain Fitness in Pseudomonas putida KT2440 around PP_5597

Experiment: P. putida Missley MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3268 and PP_3269 are separated by 187 nucleotidesPP_3269 and PP_5596 are separated by 164 nucleotidesPP_5596 and PP_5597 are separated by 78 nucleotidesPP_5597 and PP_3270 are separated by 251 nucleotides PP_3268: PP_3268 - MutT/nudix family protein, at 3,702,169 to 3,702,567 _3268 PP_3269: PP_3269 - conserved protein of unknown function, at 3,702,755 to 3,703,012 _3269 PP_5596: PP_5596 - conserved protein of unknown function, at 3,703,177 to 3,703,446 _5596 PP_5597: PP_5597 - conserved protein of unknown function, at 3,703,525 to 3,703,695 _5597 PP_3270: PP_3270 - oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase, at 3,703,947 to 3,706,001 _3270 Position (kb) 3703 3704Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 3702.621 kb on + strandat 3702.621 kb on + strandat 3702.686 kb on + strandat 3702.750 kb on + strandat 3702.750 kb on + strandat 3702.751 kb on - strandat 3702.751 kb on - strandat 3702.751 kb on - strandat 3702.863 kb on - strand, within PP_3269at 3703.042 kb on + strandat 3703.042 kb on + strandat 3703.042 kb on + strandat 3703.043 kb on - strandat 3703.043 kb on - strandat 3703.043 kb on - strandat 3703.182 kb on + strandat 3703.182 kb on + strandat 3703.182 kb on + strandat 3703.195 kb on + strandat 3703.195 kb on + strandat 3703.195 kb on + strandat 3703.196 kb on - strandat 3703.196 kb on - strandat 3703.196 kb on - strandat 3703.196 kb on - strandat 3703.208 kb on - strand, within PP_5596at 3703.507 kb on - strandat 3703.507 kb on - strandat 3703.520 kb on + strandat 3703.521 kb on - strandat 3703.521 kb on - strandat 3703.521 kb on - strandat 3703.521 kb on - strandat 3703.590 kb on + strand, within PP_5597at 3703.590 kb on + strand, within PP_5597at 3703.591 kb on - strand, within PP_5597at 3703.720 kb on + strandat 3703.720 kb on + strandat 3703.720 kb on + strandat 3703.728 kb on - strandat 3703.728 kb on - strandat 3703.818 kb on + strandat 3703.818 kb on + strandat 3703.818 kb on + strandat 3703.818 kb on + strandat 3703.819 kb on - strandat 3703.819 kb on - strandat 3703.850 kb on + strandat 3703.880 kb on + strandat 3703.941 kb on + strandat 3703.941 kb on + strandat 3703.941 kb on + strandat 3703.941 kb on + strandat 3703.942 kb on - strandat 3703.942 kb on - strandat 3703.984 kb on + strandat 3703.984 kb on + strandat 3703.984 kb on + strandat 3703.985 kb on - strandat 3703.985 kb on - strandat 3704.161 kb on + strand, within PP_3270at 3704.161 kb on + strand, within PP_3270at 3704.162 kb on - strand, within PP_3270at 3704.162 kb on - strand, within PP_3270at 3704.220 kb on + strandat 3704.221 kb on - strand, within PP_3270at 3704.228 kb on - strand, within PP_3270at 3704.247 kb on - strand, within PP_3270at 3704.393 kb on - strand, within PP_3270at 3704.410 kb on - strand, within PP_3270at 3704.443 kb on + strand, within PP_3270at 3704.443 kb on + strand, within PP_3270at 3704.484 kb on + strand, within PP_3270at 3704.485 kb on - strand, within PP_3270at 3704.503 kb on + strand, within PP_3270

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1
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3,702,621 + -1.0
3,702,621 + -2.4
3,702,686 + -2.0
3,702,750 + +0.0
3,702,750 + -4.3
3,702,751 - -1.9
3,702,751 - +1.4
3,702,751 - -1.6
3,702,863 - PP_3269 0.42 +2.1
3,703,042 + -2.0
3,703,042 + -3.5
3,703,042 + +5.9
3,703,043 - -1.0
3,703,043 - -0.8
3,703,043 - -3.3
3,703,182 + +3.3
3,703,182 + +0.0
3,703,182 + -3.0
3,703,195 + -3.2
3,703,195 + -2.7
3,703,195 + -1.8
3,703,196 - +1.6
3,703,196 - -2.0
3,703,196 - -0.6
3,703,196 - -3.0
3,703,208 - PP_5596 0.11 -0.6
3,703,507 - -1.9
3,703,507 - -1.5
3,703,520 + -0.4
3,703,521 - +0.6
3,703,521 - -0.8
3,703,521 - -0.7
3,703,521 - +0.1
3,703,590 + PP_5597 0.38 -0.0
3,703,590 + PP_5597 0.38 -1.9
3,703,591 - PP_5597 0.39 -3.9
3,703,720 + +0.0
3,703,720 + +0.6
3,703,720 + -3.2
3,703,728 - -0.5
3,703,728 - -3.4
3,703,818 + -2.7
3,703,818 + -0.4
3,703,818 + +0.4
3,703,818 + -3.7
3,703,819 - -3.3
3,703,819 - -2.2
3,703,850 + -1.3
3,703,880 + +1.5
3,703,941 + -2.6
3,703,941 + -1.4
3,703,941 + -0.6
3,703,941 + -2.3
3,703,942 - -0.6
3,703,942 - -2.3
3,703,984 + -3.8
3,703,984 + -4.3
3,703,984 + +0.6
3,703,985 - -3.4
3,703,985 - +0.6
3,704,161 + PP_3270 0.10 +2.3
3,704,161 + PP_3270 0.10 +0.7
3,704,162 - PP_3270 0.10 -3.6
3,704,162 - PP_3270 0.10 +0.7
3,704,220 + +0.6
3,704,221 - PP_3270 0.13 -2.8
3,704,228 - PP_3270 0.14 -1.4
3,704,247 - PP_3270 0.15 -3.7
3,704,393 - PP_3270 0.22 -3.5
3,704,410 - PP_3270 0.23 -3.2
3,704,443 + PP_3270 0.24 -4.0
3,704,443 + PP_3270 0.24 -0.7
3,704,484 + PP_3270 0.26 -1.1
3,704,485 - PP_3270 0.26 +1.1
3,704,503 + PP_3270 0.27 +2.2

Or see this region's nucleotide sequence