Strain Fitness in Pseudomonas putida KT2440 around PP_4939

Experiment: P. putida Missley MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4938 and PP_4939 overlap by 11 nucleotidesPP_4939 and PP_4940 are separated by 65 nucleotides PP_4938: PP_4938 - putative Glycosyl transferase, at 5,619,361 to 5,620,500 _4938 PP_4939: PP_4939 - conserved protein of unknown function, at 5,620,490 to 5,621,263 _4939 PP_4940: PP_4940 - Putative glycosyltransferase, at 5,621,329 to 5,622,285 _4940 Position (kb) 5620 5621 5622Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 5619.519 kb on - strand, within PP_4938at 5619.577 kb on + strand, within PP_4938at 5619.634 kb on + strandat 5619.635 kb on - strand, within PP_4938at 5619.640 kb on + strand, within PP_4938at 5619.641 kb on - strand, within PP_4938at 5619.660 kb on - strand, within PP_4938at 5619.660 kb on - strand, within PP_4938at 5619.726 kb on + strand, within PP_4938at 5619.844 kb on + strand, within PP_4938at 5619.844 kb on + strand, within PP_4938at 5619.845 kb on - strand, within PP_4938at 5619.845 kb on - strand, within PP_4938at 5620.120 kb on + strand, within PP_4938at 5620.120 kb on + strand, within PP_4938at 5620.121 kb on - strand, within PP_4938at 5620.121 kb on - strand, within PP_4938at 5620.170 kb on + strand, within PP_4938at 5620.170 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.287 kb on + strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.288 kb on - strand, within PP_4938at 5620.413 kb on - strandat 5620.413 kb on - strandat 5620.437 kb on + strandat 5620.437 kb on + strandat 5620.437 kb on + strandat 5620.438 kb on - strandat 5620.438 kb on - strandat 5620.438 kb on - strandat 5620.585 kb on + strand, within PP_4939at 5620.585 kb on + strand, within PP_4939at 5620.637 kb on + strand, within PP_4939at 5620.637 kb on + strand, within PP_4939at 5620.637 kb on + strand, within PP_4939at 5620.674 kb on - strand, within PP_4939at 5620.740 kb on + strand, within PP_4939at 5620.857 kb on + strand, within PP_4939at 5620.857 kb on + strand, within PP_4939at 5620.857 kb on + strand, within PP_4939at 5620.857 kb on + strand, within PP_4939at 5620.967 kb on + strand, within PP_4939at 5620.999 kb on - strand, within PP_4939at 5620.999 kb on - strand, within PP_4939at 5621.019 kb on + strand, within PP_4939at 5621.020 kb on - strand, within PP_4939at 5621.020 kb on - strand, within PP_4939at 5621.145 kb on - strand, within PP_4939at 5621.145 kb on - strand, within PP_4939at 5621.281 kb on - strandat 5621.330 kb on + strandat 5621.331 kb on - strandat 5621.416 kb on - strandat 5621.416 kb on - strandat 5621.416 kb on - strandat 5621.543 kb on + strand, within PP_4940at 5621.543 kb on + strand, within PP_4940at 5621.657 kb on + strand, within PP_4940at 5621.657 kb on + strand, within PP_4940at 5621.658 kb on - strand, within PP_4940at 5621.658 kb on - strand, within PP_4940at 5621.658 kb on - strand, within PP_4940at 5621.698 kb on - strand, within PP_4940at 5621.703 kb on + strand, within PP_4940at 5621.703 kb on + strand, within PP_4940at 5621.718 kb on - strand, within PP_4940at 5621.718 kb on - strand, within PP_4940at 5621.718 kb on - strand, within PP_4940at 5621.798 kb on + strand, within PP_4940at 5621.799 kb on - strand, within PP_4940at 5621.799 kb on - strand, within PP_4940at 5621.879 kb on + strand, within PP_4940at 5621.879 kb on + strand, within PP_4940at 5621.879 kb on + strand, within PP_4940at 5621.880 kb on - strand, within PP_4940at 5621.880 kb on - strandat 5621.940 kb on - strand, within PP_4940at 5622.003 kb on - strand, within PP_4940at 5622.003 kb on - strand, within PP_4940at 5622.003 kb on - strandat 5622.017 kb on + strand, within PP_4940at 5622.018 kb on - strand, within PP_4940at 5622.018 kb on - strand, within PP_4940at 5622.018 kb on - strand, within PP_4940at 5622.125 kb on + strand, within PP_4940at 5622.156 kb on - strand, within PP_4940at 5622.230 kb on + strandat 5622.230 kb on + strandat 5622.230 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1
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5,619,519 - PP_4938 0.14 +6.9
5,619,577 + PP_4938 0.19 +6.6
5,619,634 + +5.4
5,619,635 - PP_4938 0.24 +7.2
5,619,640 + PP_4938 0.24 +7.5
5,619,641 - PP_4938 0.25 +6.2
5,619,660 - PP_4938 0.26 +6.5
5,619,660 - PP_4938 0.26 +7.9
5,619,726 + PP_4938 0.32 +5.2
5,619,844 + PP_4938 0.42 +6.7
5,619,844 + PP_4938 0.42 +6.9
5,619,845 - PP_4938 0.42 +6.9
5,619,845 - PP_4938 0.42 +7.5
5,620,120 + PP_4938 0.67 +6.1
5,620,120 + PP_4938 0.67 +6.3
5,620,121 - PP_4938 0.67 +7.3
5,620,121 - PP_4938 0.67 +6.6
5,620,170 + PP_4938 0.71 +6.6
5,620,170 + PP_4938 0.71 +6.2
5,620,287 + PP_4938 0.81 +5.7
5,620,287 + PP_4938 0.81 +7.3
5,620,287 + PP_4938 0.81 +5.4
5,620,287 + PP_4938 0.81 +6.4
5,620,287 + PP_4938 0.81 +6.9
5,620,287 + PP_4938 0.81 +7.2
5,620,287 + PP_4938 0.81 +4.4
5,620,287 + PP_4938 0.81 +5.7
5,620,288 - PP_4938 0.81 +7.1
5,620,288 - PP_4938 0.81 +6.0
5,620,288 - PP_4938 0.81 +7.1
5,620,288 - PP_4938 0.81 +6.9
5,620,288 - PP_4938 0.81 +6.2
5,620,288 - PP_4938 0.81 +6.8
5,620,288 - PP_4938 0.81 +6.2
5,620,288 - PP_4938 0.81 +6.7
5,620,413 - +5.6
5,620,413 - +6.2
5,620,437 + +6.6
5,620,437 + +6.3
5,620,437 + +7.1
5,620,438 - +6.1
5,620,438 - +7.1
5,620,438 - +6.5
5,620,585 + PP_4939 0.12 +6.1
5,620,585 + PP_4939 0.12 +5.2
5,620,637 + PP_4939 0.19 +7.1
5,620,637 + PP_4939 0.19 +6.4
5,620,637 + PP_4939 0.19 +6.8
5,620,674 - PP_4939 0.24 +0.5
5,620,740 + PP_4939 0.32 +6.3
5,620,857 + PP_4939 0.47 +5.4
5,620,857 + PP_4939 0.47 +5.6
5,620,857 + PP_4939 0.47 +6.5
5,620,857 + PP_4939 0.47 +5.5
5,620,967 + PP_4939 0.62 +6.8
5,620,999 - PP_4939 0.66 +1.6
5,620,999 - PP_4939 0.66 -1.3
5,621,019 + PP_4939 0.68 +7.1
5,621,020 - PP_4939 0.68 +1.0
5,621,020 - PP_4939 0.68 +0.2
5,621,145 - PP_4939 0.85 +1.9
5,621,145 - PP_4939 0.85 +0.1
5,621,281 - +0.1
5,621,330 + +6.2
5,621,331 - -0.9
5,621,416 - +7.5
5,621,416 - +6.9
5,621,416 - +5.7
5,621,543 + PP_4940 0.22 +6.7
5,621,543 + PP_4940 0.22 +6.4
5,621,657 + PP_4940 0.34 +6.1
5,621,657 + PP_4940 0.34 +5.6
5,621,658 - PP_4940 0.34 +6.9
5,621,658 - PP_4940 0.34 +6.1
5,621,658 - PP_4940 0.34 +6.6
5,621,698 - PP_4940 0.39 +6.7
5,621,703 + PP_4940 0.39 +7.0
5,621,703 + PP_4940 0.39 +6.8
5,621,718 - PP_4940 0.41 +6.9
5,621,718 - PP_4940 0.41 +7.2
5,621,718 - PP_4940 0.41 +6.5
5,621,798 + PP_4940 0.49 +6.9
5,621,799 - PP_4940 0.49 +6.9
5,621,799 - PP_4940 0.49 +6.9
5,621,879 + PP_4940 0.57 +7.8
5,621,879 + PP_4940 0.57 +7.0
5,621,879 + PP_4940 0.57 +7.6
5,621,880 - PP_4940 0.58 +6.2
5,621,880 - +8.4
5,621,940 - PP_4940 0.64 +5.7
5,622,003 - PP_4940 0.70 +7.0
5,622,003 - PP_4940 0.70 +6.4
5,622,003 - +2.1
5,622,017 + PP_4940 0.72 +6.3
5,622,018 - PP_4940 0.72 +7.0
5,622,018 - PP_4940 0.72 +6.2
5,622,018 - PP_4940 0.72 +6.5
5,622,125 + PP_4940 0.83 +6.7
5,622,156 - PP_4940 0.86 +5.6
5,622,230 + +6.6
5,622,230 + +6.9
5,622,230 + +6.7

Or see this region's nucleotide sequence