Strain Fitness in Pseudomonas putida KT2440

Strain Fitness in Pseudomonas putida KT2440 around PP_4330

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	P. putida Missley MOI 0.1
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4,918,618	-	PP_4328	0.65	+0.9
4,918,986	+	PP_4328	0.89	-0.7
4,918,987	-	PP_4328	0.89	+0.3
4,918,987	-	PP_4328	0.89	-3.0
4,918,987	-	PP_4328	0.89	-1.1
4,919,163	+			+1.2
4,919,163	+			-0.9
4,919,163	+			-1.4
4,919,195	-	PP_4329	0.12	+0.4
4,919,346	-	PP_4329	0.56	-1.4
4,919,359	+	PP_4329	0.60	-0.8
4,919,359	+	PP_4329	0.60	-3.1
4,919,495	+			-3.7
4,919,495	+			-2.2
4,919,495	+			+1.1
4,919,495	+			-3.7
4,919,495	+			-1.4
4,919,496	-			-1.3
4,919,496	-			-0.3
4,919,496	-			-3.3
4,919,496	-			-1.3
4,919,499	+			-3.1
4,919,546	+			-4.0
4,919,547	-			+0.3
4,919,555	+			+1.0
4,919,555	+			+1.2
4,919,556	-			+0.9
4,919,556	-			+0.1
4,919,602	+			-4.6
4,919,603	-			+0.9
4,919,603	-			-3.4
4,919,603	-			-3.2
4,919,606	-			+0.7
4,919,724	+			+0.7
4,919,724	+			-2.1
4,919,745	+			+0.2
4,919,745	+			+0.9
4,919,745	+			-4.2
4,919,745	+			+1.3
4,919,746	-			-1.2
4,919,746	-			+0.4
4,919,746	-			-2.4
4,919,746	-			+1.3
4,919,746	-			+0.2
4,919,746	-			-3.8
4,919,746	-			+0.8
4,919,940	+	PP_4330	0.13	-2.1
4,919,940	+	PP_4330	0.13	-0.1
4,919,940	+	PP_4330	0.13	+0.3
4,919,941	-	PP_4330	0.13	-3.9
4,919,941	-	PP_4330	0.13	-3.6
4,919,941	-	PP_4330	0.13	+0.3
4,919,941	-	PP_4330	0.13	+0.9
4,919,942	+	PP_4330	0.13	-2.7
4,919,942	+	PP_4330	0.13	-0.2
4,919,942	+	PP_4330	0.13	-0.1
4,919,976	+	PP_4330	0.14	+0.9
4,919,977	-	PP_4330	0.14	+0.7
4,920,075	+	PP_4330	0.18	-1.2
4,920,227	-	PP_4330	0.24	+0.2
4,920,249	+	PP_4330	0.24	-0.8
4,920,249	+	PP_4330	0.24	-3.3
4,920,249	+	PP_4330	0.24	-1.6
4,920,249	+	PP_4330	0.24	-1.1
4,920,249	+	PP_4330	0.24	-0.1
4,920,249	+	PP_4330	0.24	+0.1
4,920,249	+	PP_4330	0.24	-3.1
4,920,249	+	PP_4330	0.24	-3.0
4,920,249	+	PP_4330	0.24	+1.2
4,920,249	+	PP_4330	0.24	-1.8
4,920,249	+	PP_4330	0.24	-2.5
4,920,250	-	PP_4330	0.25	-0.7
4,920,250	-	PP_4330	0.25	-0.5
4,920,250	-	PP_4330	0.25	-2.9
4,920,250	-	PP_4330	0.25	+0.5
4,920,250	-	PP_4330	0.25	+0.5
4,920,250	-	PP_4330	0.25	-0.4
4,920,250	-	PP_4330	0.25	-0.2
4,920,250	-	PP_4330	0.25	-1.0
4,920,250	-	PP_4330	0.25	+2.0
4,920,250	-	PP_4330	0.25	-3.1
4,920,250	-	PP_4330	0.25	-3.4
4,920,255	+	PP_4330	0.25	-1.2
4,920,255	+	PP_4330	0.25	-2.0
4,920,256	-	PP_4330	0.25	-3.8
4,920,256	-	PP_4330	0.25	+1.4
4,920,256	-	PP_4330	0.25	+1.6
4,920,276	+	PP_4330	0.26	-3.0
4,920,276	+	PP_4330	0.26	+0.4
4,920,276	+	PP_4330	0.26	-0.6
4,920,277	-	PP_4330	0.26	-3.7
4,920,277	-	PP_4330	0.26	-1.8
4,920,277	-	PP_4330	0.26	-0.7
4,920,277	-	PP_4330	0.26	-1.5
4,920,277	-	PP_4330	0.26	-1.1
4,920,312	+	PP_4330	0.27	+0.7
4,920,312	+	PP_4330	0.27	+0.9
4,920,312	+	PP_4330	0.27	-1.2
4,920,312	+	PP_4330	0.27	+0.2
4,920,312	+	PP_4330	0.27	-0.4
4,920,313	-	PP_4330	0.27	-1.2
4,920,313	-	PP_4330	0.27	+0.6
4,920,313	-	PP_4330	0.27	+0.6
4,920,313	-	PP_4330	0.27	-2.2
4,920,313	-	PP_4330	0.27	-3.4
4,920,313	-	PP_4330	0.27	+0.6
4,920,313	-	PP_4330	0.27	-0.5
4,920,323	+	PP_4330	0.27	+0.0
4,920,570	+	PP_4330	0.36	+0.0
4,920,570	+	PP_4330	0.36	-2.2
4,920,571	-	PP_4330	0.37	-3.6
4,920,571	-	PP_4330	0.37	-0.0
4,920,579	+	PP_4330	0.37	-1.0
4,920,594	+	PP_4330	0.37	-1.9
4,920,594	+	PP_4330	0.37	+0.3
4,920,594	+	PP_4330	0.37	-0.4
4,920,594	+	PP_4330	0.37	-4.0
4,920,594	+	PP_4330	0.37	-2.7
4,920,595	-	PP_4330	0.37	+0.7
4,920,595	-	PP_4330	0.37	+0.4
4,920,595	-	PP_4330	0.37	-2.2
4,920,595	-	PP_4330	0.37	-3.7
4,920,617	+	PP_4330	0.38	+0.7
4,920,617	+	PP_4330	0.38	+0.5
4,920,617	+	PP_4330	0.38	+0.2
4,920,618	-	PP_4330	0.38	+1.1
4,920,618	-	PP_4330	0.38	-0.8
4,920,657	+	PP_4330	0.40	-3.6
4,920,658	-	PP_4330	0.40	+0.9
4,920,721	-	PP_4330	0.42	+0.5
4,920,731	+	PP_4330	0.42	+1.1
4,920,732	-	PP_4330	0.43	-0.1
4,920,732	-	PP_4330	0.43	-3.4
4,920,732	-	PP_4330	0.43	+0.8
4,920,745	+	PP_4330	0.43	+0.3
4,921,010	-	PP_4330	0.53	-3.7
4,921,080	-	PP_4330	0.55	-0.0
4,921,080	-	PP_4330	0.55	-1.5
4,921,123	+	PP_4330	0.57	-0.1
4,921,137	+	PP_4330	0.58	-1.1
4,921,137	+	PP_4330	0.58	-0.7
4,921,137	+	PP_4330	0.58	+0.5
4,921,138	-	PP_4330	0.58	-2.7
4,921,180	-	PP_4330	0.59	-3.1
4,921,180	-	PP_4330	0.59	-2.2
4,921,197	+	PP_4330	0.60	-0.9
4,921,197	+	PP_4330	0.60	-3.5
4,921,197	+	PP_4330	0.60	-2.0
4,921,198	-	PP_4330	0.60	-4.4
4,921,198	-	PP_4330	0.60	+2.3
4,921,260	+	PP_4330	0.62	-1.7
4,921,260	+	PP_4330	0.62	+0.7
4,921,261	-	PP_4330	0.62	-3.4
4,921,261	-			-0.7
4,921,261	-	PP_4330	0.62	-2.3
4,921,421	+	PP_4330	0.68	-3.5
4,921,454	+	PP_4330	0.69	-0.5
4,921,455	-	PP_4330	0.69	-0.2
4,921,455	-	PP_4330	0.69	-0.4
4,921,512	+	PP_4330	0.72	-0.0
4,921,512	+	PP_4330	0.72	-0.7
4,921,512	+	PP_4330	0.72	-0.9
4,921,513	-	PP_4330	0.72	-0.2
4,921,513	-	PP_4330	0.72	-0.6
4,921,554	+	PP_4330	0.73	+2.5
4,921,554	+	PP_4330	0.73	+0.3
4,921,604	-	PP_4330	0.75	-0.2
4,921,604	-	PP_4330	0.75	+1.4
4,921,654	-	PP_4330	0.77	-1.0
4,921,654	-	PP_4330	0.77	-0.0
4,921,657	-	PP_4330	0.77	-0.2
4,921,665	+	PP_4330	0.77	+0.7
4,921,665	+	PP_4330	0.77	-3.4
4,921,707	+	PP_4330	0.79	+0.1
4,921,707	+	PP_4330	0.79	-0.7
4,921,707	+	PP_4330	0.79	-0.0
4,921,708	-	PP_4330	0.79	+1.8
4,921,708	-	PP_4330	0.79	-1.3
4,921,708	-	PP_4330	0.79	-2.8
4,921,708	-	PP_4330	0.79	+0.3
4,921,764	+	PP_4330	0.81	-0.3
4,921,764	+	PP_4330	0.81	-0.7
4,921,764	+	PP_4330	0.81	-0.7
4,921,764	+	PP_4330	0.81	-2.9
4,921,765	-	PP_4330	0.81	-1.9
4,921,765	-	PP_4330	0.81	+0.5
4,921,995	+	PP_4330	0.90	-3.5
4,921,995	+	PP_4330	0.90	-1.4
4,921,996	-	PP_4330	0.90	+2.5
4,922,043	+			-0.4
4,922,062	-			+0.9
4,922,108	-			+1.1
4,922,169	+			+1.1
4,922,169	+			-3.0
4,922,170	-			+1.5
4,922,198	+			-0.3
4,922,199	-			+0.8
4,922,199	-			-3.3
4,922,287	+			+1.7
4,922,288	-			+1.0
4,922,458	+	PP_4331	0.19	+0.5
4,922,610	+	PP_4331	0.58	-3.8
4,922,611	-	PP_4331	0.58	+0.3
4,922,706	+	PP_4331	0.82	+1.0
4,922,706	+	PP_4331	0.82	-2.1
4,922,706	+	PP_4331	0.82	+0.8
4,922,707	-	PP_4331	0.82	-0.8
4,922,707	-	PP_4331	0.82	+0.9
4,922,707	-	PP_4331	0.82	-0.1
4,922,707	-	PP_4331	0.82	-0.8
4,922,707	-	PP_4331	0.82	-0.5
4,922,768	+			-0.8
4,922,769	-			-3.2
4,922,877	+	PP_4332	0.21	-2.5
4,923,106	+	PP_4332	0.68	-3.1
4,923,106	+	PP_4332	0.68	-1.5
4,923,107	-	PP_4332	0.69	-3.4
4,923,206	+	PP_4332	0.89	-0.2
4,923,206	+	PP_4332	0.89	-4.2
4,923,263	+			-3.2

Or see this region's nucleotide sequence