Experiment: P. putida Missley MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3330 and PP_3331 overlap by 13 nucleotides PP_3331 and PP_3332 are separated by 306 nucleotides PP_3332 and PP_3333 are separated by 127 nucleotides
PP_3330: PP_3330 - putative Outer membrane ferric siderophore receptor, at 3,768,414 to 3,770,600
_3330
PP_3331: PP_3331 - conserved membrane protein of unknown function, at 3,770,588 to 3,772,081
_3331
PP_3332: PP_3332 - putative cytochrome c-type protein, at 3,772,388 to 3,772,678
_3332
PP_3333: PP_3333 - conserved protein of unknown function, at 3,772,806 to 3,773,186
_3333
Position (kb)
3770
3771
3772
3773 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3769.606 kb on - strand, within PP_3330 at 3769.771 kb on + strand, within PP_3330 at 3769.771 kb on + strand, within PP_3330 at 3769.771 kb on + strand, within PP_3330 at 3769.771 kb on + strand, within PP_3330 at 3769.772 kb on - strand, within PP_3330 at 3769.772 kb on - strand, within PP_3330 at 3769.887 kb on + strand, within PP_3330 at 3769.887 kb on + strand, within PP_3330 at 3769.888 kb on - strand, within PP_3330 at 3769.914 kb on + strand, within PP_3330 at 3769.914 kb on + strand, within PP_3330 at 3769.915 kb on - strand, within PP_3330 at 3769.923 kb on + strand, within PP_3330 at 3770.020 kb on + strand, within PP_3330 at 3770.074 kb on - strand, within PP_3330 at 3770.093 kb on + strand, within PP_3330 at 3770.094 kb on - strand, within PP_3330 at 3770.094 kb on - strand, within PP_3330 at 3770.225 kb on - strand, within PP_3330 at 3770.235 kb on + strand, within PP_3330 at 3770.236 kb on - strand, within PP_3330 at 3770.334 kb on + strand, within PP_3330 at 3770.335 kb on - strand, within PP_3330 at 3770.335 kb on - strand, within PP_3330 at 3770.376 kb on + strand, within PP_3330 at 3770.377 kb on - strand, within PP_3330 at 3770.377 kb on - strand, within PP_3330 at 3770.428 kb on - strand at 3770.436 kb on + strand at 3770.514 kb on + strand at 3770.514 kb on + strand at 3770.515 kb on - strand at 3770.515 kb on - strand at 3770.547 kb on + strand at 3770.548 kb on - strand at 3770.550 kb on + strand at 3770.550 kb on + strand at 3770.595 kb on + strand at 3770.621 kb on + strand at 3770.621 kb on + strand at 3770.621 kb on + strand at 3770.671 kb on - strand at 3770.671 kb on - strand at 3770.699 kb on + strand at 3770.700 kb on - strand at 3770.700 kb on - strand at 3770.952 kb on - strand, within PP_3331 at 3770.975 kb on + strand, within PP_3331 at 3771.080 kb on + strand, within PP_3331 at 3771.080 kb on + strand, within PP_3331 at 3771.081 kb on - strand, within PP_3331 at 3771.276 kb on + strand, within PP_3331 at 3771.326 kb on + strand, within PP_3331 at 3771.366 kb on + strand, within PP_3331 at 3771.623 kb on - strand, within PP_3331 at 3771.717 kb on + strand, within PP_3331 at 3771.717 kb on + strand, within PP_3331 at 3771.717 kb on + strand, within PP_3331 at 3771.740 kb on + strand, within PP_3331 at 3771.749 kb on + strand, within PP_3331 at 3771.752 kb on + strand, within PP_3331 at 3771.752 kb on + strand, within PP_3331 at 3771.753 kb on - strand, within PP_3331 at 3771.780 kb on - strand, within PP_3331 at 3771.780 kb on - strand, within PP_3331 at 3771.807 kb on + strand, within PP_3331 at 3771.808 kb on - strand, within PP_3331 at 3772.036 kb on - strand at 3772.036 kb on - strand at 3772.036 kb on - strand at 3772.036 kb on - strand at 3772.153 kb on - strand at 3772.223 kb on + strand at 3772.224 kb on - strand at 3772.285 kb on + strand at 3772.285 kb on + strand at 3772.349 kb on + strand at 3772.350 kb on - strand at 3772.350 kb on - strand at 3772.350 kb on - strand at 3772.350 kb on - strand at 3772.350 kb on - strand at 3772.646 kb on + strand, within PP_3332 at 3772.647 kb on - strand, within PP_3332 at 3772.647 kb on - strand, within PP_3332 at 3772.665 kb on - strand at 3772.665 kb on - strand at 3772.703 kb on + strand at 3772.724 kb on + strand at 3772.725 kb on - strand at 3772.725 kb on - strand at 3772.756 kb on + strand at 3772.757 kb on - strand at 3772.851 kb on + strand, within PP_3333 at 3772.852 kb on - strand, within PP_3333 at 3772.951 kb on + strand, within PP_3333 at 3772.952 kb on - strand, within PP_3333
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1 remove 3,769,606 - PP_3330 0.55 +0.7 3,769,771 + PP_3330 0.62 -0.3 3,769,771 + PP_3330 0.62 -0.4 3,769,771 + PP_3330 0.62 -2.5 3,769,771 + PP_3330 0.62 +1.9 3,769,772 - PP_3330 0.62 -0.5 3,769,772 - PP_3330 0.62 -4.3 3,769,887 + PP_3330 0.67 +1.0 3,769,887 + PP_3330 0.67 -0.4 3,769,888 - PP_3330 0.67 -2.8 3,769,914 + PP_3330 0.69 -0.5 3,769,914 + PP_3330 0.69 -2.9 3,769,915 - PP_3330 0.69 -3.1 3,769,923 + PP_3330 0.69 +0.7 3,770,020 + PP_3330 0.73 -0.1 3,770,074 - PP_3330 0.76 +0.1 3,770,093 + PP_3330 0.77 +0.9 3,770,094 - PP_3330 0.77 -0.3 3,770,094 - PP_3330 0.77 -0.3 3,770,225 - PP_3330 0.83 -3.7 3,770,235 + PP_3330 0.83 -2.6 3,770,236 - PP_3330 0.83 -2.3 3,770,334 + PP_3330 0.88 -3.1 3,770,335 - PP_3330 0.88 -3.8 3,770,335 - PP_3330 0.88 -2.1 3,770,376 + PP_3330 0.90 +0.8 3,770,377 - PP_3330 0.90 +1.0 3,770,377 - PP_3330 0.90 +1.7 3,770,428 - +1.1 3,770,436 + +0.4 3,770,514 + +1.6 3,770,514 + +0.4 3,770,515 - +1.0 3,770,515 - -1.8 3,770,547 + +0.1 3,770,548 - +0.4 3,770,550 + -3.0 3,770,550 + +1.0 3,770,595 + +0.5 3,770,621 + +0.6 3,770,621 + -2.5 3,770,621 + -0.8 3,770,671 - -0.4 3,770,671 - +1.0 3,770,699 + +0.4 3,770,700 - -1.7 3,770,700 - +1.2 3,770,952 - PP_3331 0.24 -3.2 3,770,975 + PP_3331 0.26 -3.7 3,771,080 + PP_3331 0.33 -2.4 3,771,080 + PP_3331 0.33 -3.1 3,771,081 - PP_3331 0.33 -1.8 3,771,276 + PP_3331 0.46 -1.3 3,771,326 + PP_3331 0.49 -1.1 3,771,366 + PP_3331 0.52 +1.2 3,771,623 - PP_3331 0.69 -2.7 3,771,717 + PP_3331 0.76 -0.9 3,771,717 + PP_3331 0.76 -0.4 3,771,717 + PP_3331 0.76 -2.3 3,771,740 + PP_3331 0.77 -3.6 3,771,749 + PP_3331 0.78 +0.7 3,771,752 + PP_3331 0.78 +0.2 3,771,752 + PP_3331 0.78 +0.6 3,771,753 - PP_3331 0.78 -2.9 3,771,780 - PP_3331 0.80 -3.6 3,771,780 - PP_3331 0.80 -3.5 3,771,807 + PP_3331 0.82 -3.1 3,771,808 - PP_3331 0.82 -3.0 3,772,036 - -2.6 3,772,036 - +0.4 3,772,036 - -0.1 3,772,036 - -0.3 3,772,153 - -2.7 3,772,223 + +0.3 3,772,224 - -2.8 3,772,285 + -1.2 3,772,285 + +0.5 3,772,349 + +0.2 3,772,350 - -2.9 3,772,350 - +0.8 3,772,350 - -1.3 3,772,350 - +0.1 3,772,350 - -2.8 3,772,646 + PP_3332 0.89 +1.2 3,772,647 - PP_3332 0.89 +2.1 3,772,647 - PP_3332 0.89 -2.2 3,772,665 - -0.1 3,772,665 - -0.7 3,772,703 + -0.4 3,772,724 + -0.4 3,772,725 - -3.2 3,772,725 - -3.5 3,772,756 + -2.2 3,772,757 - +0.9 3,772,851 + PP_3333 0.12 -0.2 3,772,852 - PP_3333 0.12 -0.8 3,772,951 + PP_3333 0.38 -1.8 3,772,952 - PP_3333 0.38 -0.0
Or see this region's nucleotide sequence