Experiment: P. putida Missley MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3254 and PP_3255 are separated by 85 nucleotides PP_3255 and PP_3256 are separated by 21 nucleotides PP_3256 and PP_3257 overlap by 4 nucleotides PP_3257 and PP_3258 are separated by 11 nucleotides
PP_3254: PP_3254 - putative Nucleosidase, at 3,688,981 to 3,689,634
_3254
PP_3255: PP_3255 - non-homologous end joining protein, at 3,689,720 to 3,690,541
_3255
PP_3256: PP_3256 - Glycosyl transferase, group 2 family protein, at 3,690,563 to 3,691,222
_3256
PP_3257: PP_3257 - putative Methyltransferase, at 3,691,219 to 3,691,818
_3257
PP_3258: PP_3258 - conserved protein of unknown function, at 3,691,830 to 3,692,585
_3258
Position (kb)
3690
3691
3692 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3689.579 kb on + strand at 3689.691 kb on + strand at 3689.899 kb on + strand, within PP_3255 at 3689.900 kb on - strand, within PP_3255 at 3689.933 kb on + strand, within PP_3255 at 3689.933 kb on + strand, within PP_3255 at 3689.934 kb on - strand, within PP_3255 at 3689.934 kb on - strand, within PP_3255 at 3690.051 kb on - strand, within PP_3255 at 3690.051 kb on - strand, within PP_3255 at 3690.054 kb on - strand, within PP_3255 at 3690.086 kb on + strand, within PP_3255 at 3690.086 kb on + strand, within PP_3255 at 3690.087 kb on - strand at 3690.087 kb on - strand, within PP_3255 at 3690.087 kb on - strand, within PP_3255 at 3690.144 kb on + strand, within PP_3255 at 3690.144 kb on + strand, within PP_3255 at 3690.145 kb on - strand, within PP_3255 at 3690.145 kb on - strand, within PP_3255 at 3690.145 kb on - strand, within PP_3255 at 3690.316 kb on - strand, within PP_3255 at 3690.316 kb on - strand, within PP_3255 at 3690.350 kb on + strand, within PP_3255 at 3690.350 kb on + strand, within PP_3255 at 3690.350 kb on + strand, within PP_3255 at 3690.351 kb on - strand, within PP_3255 at 3690.647 kb on - strand, within PP_3256 at 3690.647 kb on - strand, within PP_3256 at 3690.686 kb on + strand, within PP_3256 at 3690.687 kb on - strand, within PP_3256 at 3690.750 kb on + strand, within PP_3256 at 3690.750 kb on + strand, within PP_3256 at 3690.750 kb on + strand, within PP_3256 at 3690.751 kb on - strand, within PP_3256 at 3690.825 kb on + strand, within PP_3256 at 3690.902 kb on - strand, within PP_3256 at 3691.050 kb on - strand, within PP_3256 at 3691.100 kb on + strand, within PP_3256 at 3691.196 kb on - strand at 3691.269 kb on - strand at 3691.269 kb on - strand at 3691.334 kb on - strand, within PP_3257 at 3691.413 kb on - strand, within PP_3257 at 3691.469 kb on + strand, within PP_3257 at 3691.469 kb on + strand, within PP_3257 at 3691.469 kb on + strand, within PP_3257 at 3691.470 kb on - strand, within PP_3257 at 3691.470 kb on - strand, within PP_3257 at 3691.470 kb on - strand, within PP_3257 at 3691.470 kb on - strand, within PP_3257 at 3691.470 kb on - strand, within PP_3257 at 3691.470 kb on - strand, within PP_3257 at 3691.472 kb on + strand, within PP_3257 at 3691.473 kb on - strand, within PP_3257 at 3691.473 kb on - strand, within PP_3257 at 3691.691 kb on + strand, within PP_3257 at 3691.692 kb on - strand, within PP_3257 at 3691.692 kb on - strand, within PP_3257 at 3691.742 kb on + strand, within PP_3257 at 3691.784 kb on + strand at 3691.786 kb on + strand at 3691.786 kb on + strand at 3691.787 kb on - strand at 3691.787 kb on - strand at 3691.787 kb on - strand at 3691.787 kb on - strand at 3691.800 kb on - strand at 3692.046 kb on + strand, within PP_3258
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1 remove 3,689,579 + -3.4 3,689,691 + +2.1 3,689,899 + PP_3255 0.22 -2.6 3,689,900 - PP_3255 0.22 -2.0 3,689,933 + PP_3255 0.26 -0.8 3,689,933 + PP_3255 0.26 -3.8 3,689,934 - PP_3255 0.26 +0.5 3,689,934 - PP_3255 0.26 -3.0 3,690,051 - PP_3255 0.40 -0.0 3,690,051 - PP_3255 0.40 +1.6 3,690,054 - PP_3255 0.41 -3.3 3,690,086 + PP_3255 0.45 +0.3 3,690,086 + PP_3255 0.45 -1.6 3,690,087 - +0.3 3,690,087 - PP_3255 0.45 -3.9 3,690,087 - PP_3255 0.45 -0.2 3,690,144 + PP_3255 0.52 -1.6 3,690,144 + PP_3255 0.52 +0.6 3,690,145 - PP_3255 0.52 -0.0 3,690,145 - PP_3255 0.52 -1.4 3,690,145 - PP_3255 0.52 +0.9 3,690,316 - PP_3255 0.73 -3.0 3,690,316 - PP_3255 0.73 -2.3 3,690,350 + PP_3255 0.77 -0.9 3,690,350 + PP_3255 0.77 -1.4 3,690,350 + PP_3255 0.77 +0.6 3,690,351 - PP_3255 0.77 -1.1 3,690,647 - PP_3256 0.13 -3.3 3,690,647 - PP_3256 0.13 +0.0 3,690,686 + PP_3256 0.19 -3.6 3,690,687 - PP_3256 0.19 -2.6 3,690,750 + PP_3256 0.28 -1.4 3,690,750 + PP_3256 0.28 -1.9 3,690,750 + PP_3256 0.28 -3.8 3,690,751 - PP_3256 0.28 -4.1 3,690,825 + PP_3256 0.40 -3.0 3,690,902 - PP_3256 0.51 -3.0 3,691,050 - PP_3256 0.74 -3.9 3,691,100 + PP_3256 0.81 -0.7 3,691,196 - -0.7 3,691,269 - -0.9 3,691,269 - -2.9 3,691,334 - PP_3257 0.19 +0.4 3,691,413 - PP_3257 0.32 -3.2 3,691,469 + PP_3257 0.42 -3.3 3,691,469 + PP_3257 0.42 +1.1 3,691,469 + PP_3257 0.42 +0.0 3,691,470 - PP_3257 0.42 -0.4 3,691,470 - PP_3257 0.42 -0.5 3,691,470 - PP_3257 0.42 -0.9 3,691,470 - PP_3257 0.42 -2.7 3,691,470 - PP_3257 0.42 +0.3 3,691,470 - PP_3257 0.42 -1.8 3,691,472 + PP_3257 0.42 +0.1 3,691,473 - PP_3257 0.42 +1.3 3,691,473 - PP_3257 0.42 -3.0 3,691,691 + PP_3257 0.79 +1.2 3,691,692 - PP_3257 0.79 -1.1 3,691,692 - PP_3257 0.79 +0.2 3,691,742 + PP_3257 0.87 -1.1 3,691,784 + -0.5 3,691,786 + -1.2 3,691,786 + -3.3 3,691,787 - -0.3 3,691,787 - -0.6 3,691,787 - -2.8 3,691,787 - -3.6 3,691,800 - -3.6 3,692,046 + PP_3258 0.29 -0.1
Or see this region's nucleotide sequence