Strain Fitness in Pseudomonas putida KT2440 around PP_3256

Experiment: P. putida Missley MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3254 and PP_3255 are separated by 85 nucleotidesPP_3255 and PP_3256 are separated by 21 nucleotidesPP_3256 and PP_3257 overlap by 4 nucleotidesPP_3257 and PP_3258 are separated by 11 nucleotides PP_3254: PP_3254 - putative Nucleosidase, at 3,688,981 to 3,689,634 _3254 PP_3255: PP_3255 - non-homologous end joining protein, at 3,689,720 to 3,690,541 _3255 PP_3256: PP_3256 - Glycosyl transferase, group 2 family protein, at 3,690,563 to 3,691,222 _3256 PP_3257: PP_3257 - putative Methyltransferase, at 3,691,219 to 3,691,818 _3257 PP_3258: PP_3258 - conserved protein of unknown function, at 3,691,830 to 3,692,585 _3258 Position (kb) 3690 3691 3692Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3689.579 kb on + strandat 3689.691 kb on + strandat 3689.899 kb on + strand, within PP_3255at 3689.900 kb on - strand, within PP_3255at 3689.933 kb on + strand, within PP_3255at 3689.933 kb on + strand, within PP_3255at 3689.934 kb on - strand, within PP_3255at 3689.934 kb on - strand, within PP_3255at 3690.051 kb on - strand, within PP_3255at 3690.051 kb on - strand, within PP_3255at 3690.054 kb on - strand, within PP_3255at 3690.086 kb on + strand, within PP_3255at 3690.086 kb on + strand, within PP_3255at 3690.087 kb on - strandat 3690.087 kb on - strand, within PP_3255at 3690.087 kb on - strand, within PP_3255at 3690.144 kb on + strand, within PP_3255at 3690.144 kb on + strand, within PP_3255at 3690.145 kb on - strand, within PP_3255at 3690.145 kb on - strand, within PP_3255at 3690.145 kb on - strand, within PP_3255at 3690.316 kb on - strand, within PP_3255at 3690.316 kb on - strand, within PP_3255at 3690.350 kb on + strand, within PP_3255at 3690.350 kb on + strand, within PP_3255at 3690.350 kb on + strand, within PP_3255at 3690.351 kb on - strand, within PP_3255at 3690.647 kb on - strand, within PP_3256at 3690.647 kb on - strand, within PP_3256at 3690.686 kb on + strand, within PP_3256at 3690.687 kb on - strand, within PP_3256at 3690.750 kb on + strand, within PP_3256at 3690.750 kb on + strand, within PP_3256at 3690.750 kb on + strand, within PP_3256at 3690.751 kb on - strand, within PP_3256at 3690.825 kb on + strand, within PP_3256at 3690.902 kb on - strand, within PP_3256at 3691.050 kb on - strand, within PP_3256at 3691.100 kb on + strand, within PP_3256at 3691.196 kb on - strandat 3691.269 kb on - strandat 3691.269 kb on - strandat 3691.334 kb on - strand, within PP_3257at 3691.413 kb on - strand, within PP_3257at 3691.469 kb on + strand, within PP_3257at 3691.469 kb on + strand, within PP_3257at 3691.469 kb on + strand, within PP_3257at 3691.470 kb on - strand, within PP_3257at 3691.470 kb on - strand, within PP_3257at 3691.470 kb on - strand, within PP_3257at 3691.470 kb on - strand, within PP_3257at 3691.470 kb on - strand, within PP_3257at 3691.470 kb on - strand, within PP_3257at 3691.472 kb on + strand, within PP_3257at 3691.473 kb on - strand, within PP_3257at 3691.473 kb on - strand, within PP_3257at 3691.691 kb on + strand, within PP_3257at 3691.692 kb on - strand, within PP_3257at 3691.692 kb on - strand, within PP_3257at 3691.742 kb on + strand, within PP_3257at 3691.784 kb on + strandat 3691.786 kb on + strandat 3691.786 kb on + strandat 3691.787 kb on - strandat 3691.787 kb on - strandat 3691.787 kb on - strandat 3691.787 kb on - strandat 3691.800 kb on - strandat 3692.046 kb on + strand, within PP_3258

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1
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3,689,579 + -3.4
3,689,691 + +2.1
3,689,899 + PP_3255 0.22 -2.6
3,689,900 - PP_3255 0.22 -2.0
3,689,933 + PP_3255 0.26 -0.8
3,689,933 + PP_3255 0.26 -3.8
3,689,934 - PP_3255 0.26 +0.5
3,689,934 - PP_3255 0.26 -3.0
3,690,051 - PP_3255 0.40 -0.0
3,690,051 - PP_3255 0.40 +1.6
3,690,054 - PP_3255 0.41 -3.3
3,690,086 + PP_3255 0.45 +0.3
3,690,086 + PP_3255 0.45 -1.6
3,690,087 - +0.3
3,690,087 - PP_3255 0.45 -3.9
3,690,087 - PP_3255 0.45 -0.2
3,690,144 + PP_3255 0.52 -1.6
3,690,144 + PP_3255 0.52 +0.6
3,690,145 - PP_3255 0.52 -0.0
3,690,145 - PP_3255 0.52 -1.4
3,690,145 - PP_3255 0.52 +0.9
3,690,316 - PP_3255 0.73 -3.0
3,690,316 - PP_3255 0.73 -2.3
3,690,350 + PP_3255 0.77 -0.9
3,690,350 + PP_3255 0.77 -1.4
3,690,350 + PP_3255 0.77 +0.6
3,690,351 - PP_3255 0.77 -1.1
3,690,647 - PP_3256 0.13 -3.3
3,690,647 - PP_3256 0.13 +0.0
3,690,686 + PP_3256 0.19 -3.6
3,690,687 - PP_3256 0.19 -2.6
3,690,750 + PP_3256 0.28 -1.4
3,690,750 + PP_3256 0.28 -1.9
3,690,750 + PP_3256 0.28 -3.8
3,690,751 - PP_3256 0.28 -4.1
3,690,825 + PP_3256 0.40 -3.0
3,690,902 - PP_3256 0.51 -3.0
3,691,050 - PP_3256 0.74 -3.9
3,691,100 + PP_3256 0.81 -0.7
3,691,196 - -0.7
3,691,269 - -0.9
3,691,269 - -2.9
3,691,334 - PP_3257 0.19 +0.4
3,691,413 - PP_3257 0.32 -3.2
3,691,469 + PP_3257 0.42 -3.3
3,691,469 + PP_3257 0.42 +1.1
3,691,469 + PP_3257 0.42 +0.0
3,691,470 - PP_3257 0.42 -0.4
3,691,470 - PP_3257 0.42 -0.5
3,691,470 - PP_3257 0.42 -0.9
3,691,470 - PP_3257 0.42 -2.7
3,691,470 - PP_3257 0.42 +0.3
3,691,470 - PP_3257 0.42 -1.8
3,691,472 + PP_3257 0.42 +0.1
3,691,473 - PP_3257 0.42 +1.3
3,691,473 - PP_3257 0.42 -3.0
3,691,691 + PP_3257 0.79 +1.2
3,691,692 - PP_3257 0.79 -1.1
3,691,692 - PP_3257 0.79 +0.2
3,691,742 + PP_3257 0.87 -1.1
3,691,784 + -0.5
3,691,786 + -1.2
3,691,786 + -3.3
3,691,787 - -0.3
3,691,787 - -0.6
3,691,787 - -2.8
3,691,787 - -3.6
3,691,800 - -3.6
3,692,046 + PP_3258 0.29 -0.1

Or see this region's nucleotide sequence