Experiment: P. putida Missley MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2945 and PP_2946 are separated by 157 nucleotides PP_2946 and PP_2947 are separated by 260 nucleotides PP_2947 and PP_2948 are separated by 141 nucleotides
PP_2945: PP_2945 - putative sensor histidine kinase/response regulator, at 3,349,504 to 3,350,907
_2945
PP_2946: PP_2946 - peptidyl-tRNA hydrolase, ribosome rescue factor, at 3,351,065 to 3,351,478
_2946
PP_2947: PP_2947 - putative Transcriptional regulator MvaT, P16 subunit, at 3,351,739 to 3,352,110
_2947
PP_2948: PP_2948 - Transcriptional regulator, GntR family, at 3,352,252 to 3,353,634
_2948
Position (kb)
3351
3352 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3350.222 kb on - strand, within PP_2945 at 3350.238 kb on - strand, within PP_2945 at 3350.254 kb on + strand, within PP_2945 at 3350.255 kb on - strand, within PP_2945 at 3350.255 kb on - strand, within PP_2945 at 3350.401 kb on - strand, within PP_2945 at 3350.490 kb on + strand, within PP_2945 at 3350.491 kb on - strand, within PP_2945 at 3350.591 kb on + strand, within PP_2945 at 3350.592 kb on - strand, within PP_2945 at 3350.698 kb on - strand, within PP_2945 at 3350.801 kb on - strand at 3350.810 kb on + strand at 3350.810 kb on + strand at 3350.831 kb on + strand at 3350.832 kb on - strand at 3350.837 kb on + strand at 3350.837 kb on + strand at 3350.837 kb on + strand at 3350.873 kb on + strand at 3350.874 kb on - strand at 3350.874 kb on - strand at 3350.923 kb on - strand at 3351.073 kb on + strand at 3351.073 kb on + strand at 3351.119 kb on + strand, within PP_2946 at 3351.174 kb on + strand, within PP_2946 at 3351.180 kb on + strand, within PP_2946 at 3351.181 kb on - strand, within PP_2946 at 3351.181 kb on - strand, within PP_2946 at 3351.181 kb on - strand, within PP_2946 at 3351.181 kb on - strand, within PP_2946 at 3351.181 kb on - strand, within PP_2946 at 3351.219 kb on - strand, within PP_2946 at 3351.476 kb on + strand at 3351.476 kb on + strand at 3351.476 kb on + strand at 3351.476 kb on + strand at 3351.476 kb on + strand at 3351.477 kb on - strand at 3351.477 kb on - strand at 3351.552 kb on + strand at 3351.553 kb on - strand at 3351.553 kb on - strand at 3351.596 kb on - strand at 3351.604 kb on - strand at 3351.629 kb on + strand at 3351.630 kb on - strand at 3351.630 kb on - strand at 3351.630 kb on - strand at 3351.630 kb on - strand at 3351.704 kb on - strand at 3351.713 kb on + strand at 3351.875 kb on + strand, within PP_2947 at 3351.884 kb on - strand, within PP_2947 at 3351.997 kb on + strand, within PP_2947 at 3351.998 kb on - strand, within PP_2947 at 3351.998 kb on - strand, within PP_2947 at 3352.012 kb on - strand, within PP_2947 at 3352.075 kb on + strand at 3352.376 kb on - strand at 3352.376 kb on - strand at 3352.376 kb on - strand at 3352.445 kb on + strand, within PP_2948 at 3352.445 kb on + strand, within PP_2948 at 3352.445 kb on + strand, within PP_2948 at 3352.445 kb on + strand, within PP_2948 at 3352.446 kb on - strand, within PP_2948 at 3352.446 kb on - strand, within PP_2948 at 3352.446 kb on - strand, within PP_2948 at 3352.446 kb on - strand, within PP_2948
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1 remove 3,350,222 - PP_2945 0.51 -2.6 3,350,238 - PP_2945 0.52 -2.0 3,350,254 + PP_2945 0.53 +2.0 3,350,255 - PP_2945 0.53 -3.5 3,350,255 - PP_2945 0.53 -3.0 3,350,401 - PP_2945 0.64 +0.6 3,350,490 + PP_2945 0.70 -3.7 3,350,491 - PP_2945 0.70 +0.4 3,350,591 + PP_2945 0.77 -0.1 3,350,592 - PP_2945 0.77 +1.3 3,350,698 - PP_2945 0.85 +2.0 3,350,801 - +1.3 3,350,810 + +1.5 3,350,810 + +0.1 3,350,831 + +2.5 3,350,832 - -3.5 3,350,837 + +0.2 3,350,837 + +0.8 3,350,837 + -1.2 3,350,873 + -0.1 3,350,874 - +0.7 3,350,874 - -1.1 3,350,923 - +0.6 3,351,073 + -3.8 3,351,073 + +1.8 3,351,119 + PP_2946 0.13 -2.8 3,351,174 + PP_2946 0.26 -1.8 3,351,180 + PP_2946 0.28 -3.1 3,351,181 - PP_2946 0.28 -0.9 3,351,181 - PP_2946 0.28 +0.2 3,351,181 - PP_2946 0.28 +0.8 3,351,181 - PP_2946 0.28 -2.8 3,351,181 - PP_2946 0.28 -3.5 3,351,219 - PP_2946 0.37 -0.8 3,351,476 + +0.0 3,351,476 + +0.6 3,351,476 + -2.0 3,351,476 + -3.7 3,351,476 + -2.4 3,351,477 - +1.0 3,351,477 - -1.7 3,351,552 + +0.5 3,351,553 - -2.5 3,351,553 - -0.8 3,351,596 - +1.8 3,351,604 - +1.8 3,351,629 + -2.2 3,351,630 - +0.3 3,351,630 - -2.0 3,351,630 - -3.4 3,351,630 - -3.7 3,351,704 - -0.4 3,351,713 + +0.2 3,351,875 + PP_2947 0.37 -1.2 3,351,884 - PP_2947 0.39 +1.3 3,351,997 + PP_2947 0.69 +0.4 3,351,998 - PP_2947 0.70 -3.2 3,351,998 - PP_2947 0.70 +0.3 3,352,012 - PP_2947 0.73 +0.2 3,352,075 + +0.3 3,352,376 - +0.8 3,352,376 - +0.9 3,352,376 - +0.3 3,352,445 + PP_2948 0.14 -0.0 3,352,445 + PP_2948 0.14 -1.5 3,352,445 + PP_2948 0.14 -1.0 3,352,445 + PP_2948 0.14 +1.2 3,352,446 - PP_2948 0.14 +1.6 3,352,446 - PP_2948 0.14 +0.3 3,352,446 - PP_2948 0.14 +0.8 3,352,446 - PP_2948 0.14 -0.7
Or see this region's nucleotide sequence