Strain Fitness in Pseudomonas putida KT2440 around PP_2771

Experiment: P. putida Missley MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2770 and PP_2771 are separated by 36 nucleotidesPP_2771 and PP_2772 are separated by 8 nucleotides PP_2770: PP_2770 - conserved exported protein of unknown function, at 3,153,797 to 3,155,122 _2770 PP_2771: PP_2771 - Sigma-54 dependent transcriptional regulator, at 3,155,159 to 3,156,262 _2771 PP_2772: PP_2772 - putative Monooxygenase, at 3,156,271 to 3,157,458 _2772 Position (kb) 3155 3156 3157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3154.223 kb on + strand, within PP_2770at 3154.224 kb on - strand, within PP_2770at 3154.224 kb on - strand, within PP_2770at 3154.261 kb on - strand, within PP_2770at 3154.398 kb on - strand, within PP_2770at 3154.398 kb on - strand, within PP_2770at 3154.754 kb on + strand, within PP_2770at 3154.757 kb on + strand, within PP_2770at 3154.758 kb on - strand, within PP_2770at 3154.758 kb on - strand, within PP_2770at 3154.758 kb on - strand, within PP_2770at 3154.935 kb on + strand, within PP_2770at 3155.072 kb on + strandat 3155.072 kb on + strandat 3155.072 kb on + strandat 3155.090 kb on - strandat 3155.093 kb on - strandat 3155.168 kb on + strandat 3155.169 kb on - strandat 3155.169 kb on - strandat 3155.331 kb on - strand, within PP_2771at 3155.569 kb on - strand, within PP_2771at 3155.569 kb on - strand, within PP_2771at 3155.607 kb on - strand, within PP_2771at 3155.617 kb on - strand, within PP_2771at 3155.695 kb on - strand, within PP_2771at 3155.725 kb on - strand, within PP_2771at 3155.727 kb on + strand, within PP_2771at 3155.727 kb on + strand, within PP_2771at 3155.728 kb on - strand, within PP_2771at 3155.728 kb on - strand, within PP_2771at 3156.077 kb on + strand, within PP_2771at 3156.077 kb on + strand, within PP_2771at 3156.077 kb on + strand, within PP_2771at 3156.078 kb on - strand, within PP_2771at 3156.272 kb on + strandat 3156.272 kb on + strandat 3156.279 kb on - strandat 3156.384 kb on - strandat 3156.621 kb on - strand, within PP_2772at 3156.635 kb on + strand, within PP_2772at 3156.636 kb on - strand, within PP_2772at 3156.636 kb on - strand, within PP_2772at 3156.636 kb on - strand, within PP_2772at 3156.636 kb on - strand, within PP_2772at 3156.733 kb on - strand, within PP_2772at 3157.066 kb on + strand, within PP_2772at 3157.067 kb on - strand, within PP_2772at 3157.171 kb on + strand, within PP_2772

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1
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3,154,223 + PP_2770 0.32 -0.3
3,154,224 - PP_2770 0.32 +0.7
3,154,224 - PP_2770 0.32 -3.2
3,154,261 - PP_2770 0.35 -0.6
3,154,398 - PP_2770 0.45 +1.3
3,154,398 - PP_2770 0.45 -0.5
3,154,754 + PP_2770 0.72 +0.6
3,154,757 + PP_2770 0.72 -0.2
3,154,758 - PP_2770 0.72 -2.6
3,154,758 - PP_2770 0.72 -2.4
3,154,758 - PP_2770 0.72 -0.3
3,154,935 + PP_2770 0.86 +1.8
3,155,072 + -1.9
3,155,072 + +0.0
3,155,072 + -3.2
3,155,090 - -3.3
3,155,093 - -2.3
3,155,168 + +0.4
3,155,169 - -2.2
3,155,169 - +1.3
3,155,331 - PP_2771 0.16 -0.2
3,155,569 - PP_2771 0.37 -2.1
3,155,569 - PP_2771 0.37 -0.2
3,155,607 - PP_2771 0.41 -3.2
3,155,617 - PP_2771 0.41 -1.3
3,155,695 - PP_2771 0.49 -3.4
3,155,725 - PP_2771 0.51 -3.8
3,155,727 + PP_2771 0.51 -2.4
3,155,727 + PP_2771 0.51 -3.5
3,155,728 - PP_2771 0.52 +1.2
3,155,728 - PP_2771 0.52 -3.4
3,156,077 + PP_2771 0.83 -2.6
3,156,077 + PP_2771 0.83 -2.0
3,156,077 + PP_2771 0.83 -2.8
3,156,078 - PP_2771 0.83 -3.1
3,156,272 + -3.6
3,156,272 + -3.1
3,156,279 - -0.1
3,156,384 - -1.4
3,156,621 - PP_2772 0.29 -1.5
3,156,635 + PP_2772 0.31 +0.8
3,156,636 - PP_2772 0.31 -2.2
3,156,636 - PP_2772 0.31 +0.4
3,156,636 - PP_2772 0.31 +1.1
3,156,636 - PP_2772 0.31 -2.6
3,156,733 - PP_2772 0.39 -3.3
3,157,066 + PP_2772 0.67 +0.3
3,157,067 - PP_2772 0.67 -1.9
3,157,171 + PP_2772 0.76 +0.7

Or see this region's nucleotide sequence