Strain Fitness in Pseudomonas putida KT2440 around PP_2605

Experiment: P. putida Missley MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2604 and PP_2605 are separated by 241 nucleotidesPP_2605 and PP_2606 are separated by 41 nucleotidesPP_2606 and PP_2607 overlap by 16 nucleotides PP_2604: PP_2604 - major facilitator family transporter, at 2,977,029 to 2,978,354 _2604 PP_2605: PP_2605 - conserved protein of unknown function, at 2,978,596 to 2,980,284 _2605 PP_2606: PP_2606 - conserved protein of unknown function, at 2,980,326 to 2,980,646 _2606 PP_2607: PP_2607 - conserved exported protein of unknown function, at 2,980,631 to 2,982,364 _2607 Position (kb) 2978 2979 2980 2981Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2977.681 kb on + strand, within PP_2604at 2977.682 kb on - strand, within PP_2604at 2977.726 kb on + strand, within PP_2604at 2977.726 kb on + strand, within PP_2604at 2977.726 kb on + strand, within PP_2604at 2977.729 kb on + strandat 2977.730 kb on - strand, within PP_2604at 2977.730 kb on - strand, within PP_2604at 2977.937 kb on - strand, within PP_2604at 2978.037 kb on + strand, within PP_2604at 2978.037 kb on + strand, within PP_2604at 2978.110 kb on + strand, within PP_2604at 2978.111 kb on - strand, within PP_2604at 2978.216 kb on - strand, within PP_2604at 2978.216 kb on - strand, within PP_2604at 2978.216 kb on - strand, within PP_2604at 2978.216 kb on - strand, within PP_2604at 2978.354 kb on + strandat 2978.354 kb on + strandat 2978.355 kb on - strandat 2978.355 kb on - strandat 2978.355 kb on - strandat 2978.355 kb on - strandat 2978.355 kb on - strandat 2978.378 kb on + strandat 2978.394 kb on + strandat 2978.533 kb on + strandat 2978.552 kb on + strandat 2978.640 kb on - strandat 2978.667 kb on + strandat 2978.684 kb on + strandat 2978.688 kb on - strandat 2978.868 kb on + strand, within PP_2605at 2978.868 kb on + strand, within PP_2605at 2978.868 kb on + strandat 2978.869 kb on - strand, within PP_2605at 2978.869 kb on - strand, within PP_2605at 2978.872 kb on + strand, within PP_2605at 2978.903 kb on + strand, within PP_2605at 2978.903 kb on + strand, within PP_2605at 2978.928 kb on + strand, within PP_2605at 2978.929 kb on - strand, within PP_2605at 2979.044 kb on + strand, within PP_2605at 2979.059 kb on + strand, within PP_2605at 2979.060 kb on - strand, within PP_2605at 2979.104 kb on + strand, within PP_2605at 2979.105 kb on - strand, within PP_2605at 2979.198 kb on - strand, within PP_2605at 2979.425 kb on + strand, within PP_2605at 2979.468 kb on + strand, within PP_2605at 2979.468 kb on + strand, within PP_2605at 2979.524 kb on + strand, within PP_2605at 2979.524 kb on + strand, within PP_2605at 2979.525 kb on - strand, within PP_2605at 2979.838 kb on + strand, within PP_2605at 2979.881 kb on - strand, within PP_2605at 2979.939 kb on + strandat 2980.262 kb on - strandat 2980.478 kb on - strand, within PP_2606at 2980.625 kb on - strandat 2980.625 kb on - strandat 2980.639 kb on + strandat 2980.639 kb on + strandat 2980.640 kb on - strandat 2980.642 kb on + strandat 2980.642 kb on + strandat 2980.642 kb on + strandat 2980.643 kb on - strandat 2980.797 kb on + strandat 2980.797 kb on + strandat 2980.798 kb on - strandat 2980.903 kb on - strand, within PP_2607at 2980.903 kb on - strand, within PP_2607at 2980.945 kb on + strand, within PP_2607at 2980.945 kb on + strand, within PP_2607at 2980.966 kb on - strand, within PP_2607at 2980.966 kb on - strand, within PP_2607at 2980.974 kb on + strand, within PP_2607at 2981.115 kb on + strand, within PP_2607at 2981.115 kb on + strand, within PP_2607at 2981.256 kb on + strand, within PP_2607

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1
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2,977,681 + PP_2604 0.49 +1.0
2,977,682 - PP_2604 0.49 -2.8
2,977,726 + PP_2604 0.53 -0.5
2,977,726 + PP_2604 0.53 -3.9
2,977,726 + PP_2604 0.53 +0.9
2,977,729 + +0.4
2,977,730 - PP_2604 0.53 -3.1
2,977,730 - PP_2604 0.53 +1.2
2,977,937 - PP_2604 0.68 -1.2
2,978,037 + PP_2604 0.76 -3.1
2,978,037 + PP_2604 0.76 -3.1
2,978,110 + PP_2604 0.82 -1.6
2,978,111 - PP_2604 0.82 -3.4
2,978,216 - PP_2604 0.90 -3.1
2,978,216 - PP_2604 0.90 +1.1
2,978,216 - PP_2604 0.90 -0.5
2,978,216 - PP_2604 0.90 +0.9
2,978,354 + +1.6
2,978,354 + -3.8
2,978,355 - -3.0
2,978,355 - -2.1
2,978,355 - -0.2
2,978,355 - +2.4
2,978,355 - +1.2
2,978,378 + +0.8
2,978,394 + +0.1
2,978,533 + -1.1
2,978,552 + +2.4
2,978,640 - +1.0
2,978,667 + -2.6
2,978,684 + -0.6
2,978,688 - -2.4
2,978,868 + PP_2605 0.16 -3.6
2,978,868 + PP_2605 0.16 -2.8
2,978,868 + +0.4
2,978,869 - PP_2605 0.16 -2.7
2,978,869 - PP_2605 0.16 -2.2
2,978,872 + PP_2605 0.16 -0.8
2,978,903 + PP_2605 0.18 -3.7
2,978,903 + PP_2605 0.18 -3.0
2,978,928 + PP_2605 0.20 -3.7
2,978,929 - PP_2605 0.20 -3.6
2,979,044 + PP_2605 0.27 -0.9
2,979,059 + PP_2605 0.27 +0.2
2,979,060 - PP_2605 0.27 -3.7
2,979,104 + PP_2605 0.30 +0.2
2,979,105 - PP_2605 0.30 +0.4
2,979,198 - PP_2605 0.36 -1.5
2,979,425 + PP_2605 0.49 -2.5
2,979,468 + PP_2605 0.52 -0.6
2,979,468 + PP_2605 0.52 +1.7
2,979,524 + PP_2605 0.55 -2.9
2,979,524 + PP_2605 0.55 +0.4
2,979,525 - PP_2605 0.55 -0.0
2,979,838 + PP_2605 0.74 -0.4
2,979,881 - PP_2605 0.76 -2.9
2,979,939 + +2.4
2,980,262 - -0.0
2,980,478 - PP_2606 0.47 -2.4
2,980,625 - -2.7
2,980,625 - +0.3
2,980,639 + -0.3
2,980,639 + +1.4
2,980,640 - -0.4
2,980,642 + -2.8
2,980,642 + -1.3
2,980,642 + -0.3
2,980,643 - -2.7
2,980,797 + -0.3
2,980,797 + -2.0
2,980,798 - -3.5
2,980,903 - PP_2607 0.16 -2.7
2,980,903 - PP_2607 0.16 +1.3
2,980,945 + PP_2607 0.18 +0.4
2,980,945 + PP_2607 0.18 +1.4
2,980,966 - PP_2607 0.19 +0.2
2,980,966 - PP_2607 0.19 -2.9
2,980,974 + PP_2607 0.20 +1.4
2,981,115 + PP_2607 0.28 +0.7
2,981,115 + PP_2607 0.28 +2.1
2,981,256 + PP_2607 0.36 +1.1

Or see this region's nucleotide sequence