Experiment: P. putida Missley MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2604 and PP_2605 are separated by 241 nucleotides PP_2605 and PP_2606 are separated by 41 nucleotides PP_2606 and PP_2607 overlap by 16 nucleotides
PP_2604: PP_2604 - major facilitator family transporter, at 2,977,029 to 2,978,354
_2604
PP_2605: PP_2605 - conserved protein of unknown function, at 2,978,596 to 2,980,284
_2605
PP_2606: PP_2606 - conserved protein of unknown function, at 2,980,326 to 2,980,646
_2606
PP_2607: PP_2607 - conserved exported protein of unknown function, at 2,980,631 to 2,982,364
_2607
Position (kb)
2978
2979
2980
2981 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2977.681 kb on + strand, within PP_2604 at 2977.682 kb on - strand, within PP_2604 at 2977.726 kb on + strand, within PP_2604 at 2977.726 kb on + strand, within PP_2604 at 2977.726 kb on + strand, within PP_2604 at 2977.729 kb on + strand at 2977.730 kb on - strand, within PP_2604 at 2977.730 kb on - strand, within PP_2604 at 2977.937 kb on - strand, within PP_2604 at 2978.037 kb on + strand, within PP_2604 at 2978.037 kb on + strand, within PP_2604 at 2978.110 kb on + strand, within PP_2604 at 2978.111 kb on - strand, within PP_2604 at 2978.216 kb on - strand, within PP_2604 at 2978.216 kb on - strand, within PP_2604 at 2978.216 kb on - strand, within PP_2604 at 2978.216 kb on - strand, within PP_2604 at 2978.354 kb on + strand at 2978.354 kb on + strand at 2978.355 kb on - strand at 2978.355 kb on - strand at 2978.355 kb on - strand at 2978.355 kb on - strand at 2978.355 kb on - strand at 2978.378 kb on + strand at 2978.394 kb on + strand at 2978.533 kb on + strand at 2978.552 kb on + strand at 2978.640 kb on - strand at 2978.667 kb on + strand at 2978.684 kb on + strand at 2978.688 kb on - strand at 2978.868 kb on + strand, within PP_2605 at 2978.868 kb on + strand, within PP_2605 at 2978.868 kb on + strand at 2978.869 kb on - strand, within PP_2605 at 2978.869 kb on - strand, within PP_2605 at 2978.872 kb on + strand, within PP_2605 at 2978.903 kb on + strand, within PP_2605 at 2978.903 kb on + strand, within PP_2605 at 2978.928 kb on + strand, within PP_2605 at 2978.929 kb on - strand, within PP_2605 at 2979.044 kb on + strand, within PP_2605 at 2979.059 kb on + strand, within PP_2605 at 2979.060 kb on - strand, within PP_2605 at 2979.104 kb on + strand, within PP_2605 at 2979.105 kb on - strand, within PP_2605 at 2979.198 kb on - strand, within PP_2605 at 2979.425 kb on + strand, within PP_2605 at 2979.468 kb on + strand, within PP_2605 at 2979.468 kb on + strand, within PP_2605 at 2979.524 kb on + strand, within PP_2605 at 2979.524 kb on + strand, within PP_2605 at 2979.525 kb on - strand, within PP_2605 at 2979.838 kb on + strand, within PP_2605 at 2979.881 kb on - strand, within PP_2605 at 2979.939 kb on + strand at 2980.262 kb on - strand at 2980.478 kb on - strand, within PP_2606 at 2980.625 kb on - strand at 2980.625 kb on - strand at 2980.639 kb on + strand at 2980.639 kb on + strand at 2980.640 kb on - strand at 2980.642 kb on + strand at 2980.642 kb on + strand at 2980.642 kb on + strand at 2980.643 kb on - strand at 2980.797 kb on + strand at 2980.797 kb on + strand at 2980.798 kb on - strand at 2980.903 kb on - strand, within PP_2607 at 2980.903 kb on - strand, within PP_2607 at 2980.945 kb on + strand, within PP_2607 at 2980.945 kb on + strand, within PP_2607 at 2980.966 kb on - strand, within PP_2607 at 2980.966 kb on - strand, within PP_2607 at 2980.974 kb on + strand, within PP_2607 at 2981.115 kb on + strand, within PP_2607 at 2981.115 kb on + strand, within PP_2607 at 2981.256 kb on + strand, within PP_2607
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1 remove 2,977,681 + PP_2604 0.49 +1.0 2,977,682 - PP_2604 0.49 -2.8 2,977,726 + PP_2604 0.53 -0.5 2,977,726 + PP_2604 0.53 -3.9 2,977,726 + PP_2604 0.53 +0.9 2,977,729 + +0.4 2,977,730 - PP_2604 0.53 -3.1 2,977,730 - PP_2604 0.53 +1.2 2,977,937 - PP_2604 0.68 -1.2 2,978,037 + PP_2604 0.76 -3.1 2,978,037 + PP_2604 0.76 -3.1 2,978,110 + PP_2604 0.82 -1.6 2,978,111 - PP_2604 0.82 -3.4 2,978,216 - PP_2604 0.90 -3.1 2,978,216 - PP_2604 0.90 +1.1 2,978,216 - PP_2604 0.90 -0.5 2,978,216 - PP_2604 0.90 +0.9 2,978,354 + +1.6 2,978,354 + -3.8 2,978,355 - -3.0 2,978,355 - -2.1 2,978,355 - -0.2 2,978,355 - +2.4 2,978,355 - +1.2 2,978,378 + +0.8 2,978,394 + +0.1 2,978,533 + -1.1 2,978,552 + +2.4 2,978,640 - +1.0 2,978,667 + -2.6 2,978,684 + -0.6 2,978,688 - -2.4 2,978,868 + PP_2605 0.16 -3.6 2,978,868 + PP_2605 0.16 -2.8 2,978,868 + +0.4 2,978,869 - PP_2605 0.16 -2.7 2,978,869 - PP_2605 0.16 -2.2 2,978,872 + PP_2605 0.16 -0.8 2,978,903 + PP_2605 0.18 -3.7 2,978,903 + PP_2605 0.18 -3.0 2,978,928 + PP_2605 0.20 -3.7 2,978,929 - PP_2605 0.20 -3.6 2,979,044 + PP_2605 0.27 -0.9 2,979,059 + PP_2605 0.27 +0.2 2,979,060 - PP_2605 0.27 -3.7 2,979,104 + PP_2605 0.30 +0.2 2,979,105 - PP_2605 0.30 +0.4 2,979,198 - PP_2605 0.36 -1.5 2,979,425 + PP_2605 0.49 -2.5 2,979,468 + PP_2605 0.52 -0.6 2,979,468 + PP_2605 0.52 +1.7 2,979,524 + PP_2605 0.55 -2.9 2,979,524 + PP_2605 0.55 +0.4 2,979,525 - PP_2605 0.55 -0.0 2,979,838 + PP_2605 0.74 -0.4 2,979,881 - PP_2605 0.76 -2.9 2,979,939 + +2.4 2,980,262 - -0.0 2,980,478 - PP_2606 0.47 -2.4 2,980,625 - -2.7 2,980,625 - +0.3 2,980,639 + -0.3 2,980,639 + +1.4 2,980,640 - -0.4 2,980,642 + -2.8 2,980,642 + -1.3 2,980,642 + -0.3 2,980,643 - -2.7 2,980,797 + -0.3 2,980,797 + -2.0 2,980,798 - -3.5 2,980,903 - PP_2607 0.16 -2.7 2,980,903 - PP_2607 0.16 +1.3 2,980,945 + PP_2607 0.18 +0.4 2,980,945 + PP_2607 0.18 +1.4 2,980,966 - PP_2607 0.19 +0.2 2,980,966 - PP_2607 0.19 -2.9 2,980,974 + PP_2607 0.20 +1.4 2,981,115 + PP_2607 0.28 +0.7 2,981,115 + PP_2607 0.28 +2.1 2,981,256 + PP_2607 0.36 +1.1
Or see this region's nucleotide sequence