Strain Fitness in Pseudomonas putida KT2440 around PP_2593

Experiment: P. putida Missley MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2591 and PP_2592 overlap by 37 nucleotidesPP_2592 and PP_2593 overlap by 4 nucleotidesPP_2593 and PP_2594 overlap by 4 nucleotidesPP_2594 and PP_2595 overlap by 1 nucleotides PP_2591: PP_2591 - Ferric anguibactin-binding protein, at 2,961,231 to 2,962,253 _2591 PP_2592: PP_2592 - Ferric siderophore ABC transporter, ATP-binding protein, at 2,962,217 to 2,962,993 _2592 PP_2593: PP_2593 - Ferric siderophore ABC transporter, permease protein, at 2,962,990 to 2,963,931 _2593 PP_2594: PP_2594 - Ferric anguibactin transport system permease protein FatD, at 2,963,928 to 2,964,869 _2594 PP_2595: PP_2595 - putative ABC transporter, permease/ATP-binding protein, at 2,964,869 to 2,966,626 _2595 Position (kb) 2962 2963 2964Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2962.074 kb on + strand, within PP_2591at 2962.075 kb on - strand, within PP_2591at 2962.090 kb on + strand, within PP_2591at 2962.090 kb on + strand, within PP_2591at 2962.091 kb on - strand, within PP_2591at 2962.180 kb on - strandat 2962.246 kb on - strandat 2962.600 kb on - strand, within PP_2592at 2962.777 kb on - strand, within PP_2592at 2962.777 kb on - strand, within PP_2592at 2962.820 kb on + strand, within PP_2592at 2962.820 kb on + strand, within PP_2592at 2962.962 kb on + strandat 2962.987 kb on + strandat 2962.988 kb on - strandat 2963.030 kb on + strandat 2963.030 kb on + strandat 2963.031 kb on - strandat 2963.031 kb on - strandat 2963.031 kb on - strandat 2963.075 kb on + strandat 2963.183 kb on + strand, within PP_2593at 2963.184 kb on - strand, within PP_2593at 2963.294 kb on + strand, within PP_2593at 2963.295 kb on - strand, within PP_2593at 2963.295 kb on - strand, within PP_2593at 2963.552 kb on + strand, within PP_2593at 2963.553 kb on - strand, within PP_2593at 2963.617 kb on + strand, within PP_2593at 2963.617 kb on + strand, within PP_2593at 2963.618 kb on - strandat 2963.709 kb on - strand, within PP_2593at 2963.721 kb on - strand, within PP_2593at 2963.847 kb on - strandat 2963.847 kb on - strandat 2964.193 kb on - strand, within PP_2594at 2964.226 kb on + strand, within PP_2594at 2964.226 kb on + strand, within PP_2594at 2964.289 kb on + strand, within PP_2594at 2964.289 kb on + strand, within PP_2594at 2964.295 kb on + strand, within PP_2594at 2964.296 kb on - strand, within PP_2594at 2964.296 kb on - strand, within PP_2594at 2964.296 kb on - strand, within PP_2594at 2964.410 kb on - strand, within PP_2594at 2964.415 kb on + strand, within PP_2594at 2964.415 kb on + strand, within PP_2594at 2964.416 kb on - strand, within PP_2594at 2964.449 kb on - strand, within PP_2594at 2964.493 kb on - strand, within PP_2594at 2964.714 kb on + strand, within PP_2594at 2964.715 kb on - strand, within PP_2594at 2964.779 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1
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2,962,074 + PP_2591 0.82 -0.0
2,962,075 - PP_2591 0.83 -0.1
2,962,090 + PP_2591 0.84 -4.5
2,962,090 + PP_2591 0.84 -2.9
2,962,091 - PP_2591 0.84 -3.6
2,962,180 - -3.1
2,962,246 - -0.5
2,962,600 - PP_2592 0.49 -3.0
2,962,777 - PP_2592 0.72 -0.3
2,962,777 - PP_2592 0.72 +0.2
2,962,820 + PP_2592 0.78 -4.1
2,962,820 + PP_2592 0.78 -2.3
2,962,962 + -2.3
2,962,987 + +1.8
2,962,988 - -2.0
2,963,030 + -0.5
2,963,030 + -3.9
2,963,031 - -0.4
2,963,031 - -1.4
2,963,031 - -0.4
2,963,075 + -1.0
2,963,183 + PP_2593 0.20 -2.9
2,963,184 - PP_2593 0.21 -3.6
2,963,294 + PP_2593 0.32 -3.0
2,963,295 - PP_2593 0.32 +0.7
2,963,295 - PP_2593 0.32 -3.7
2,963,552 + PP_2593 0.60 -0.0
2,963,553 - PP_2593 0.60 -3.1
2,963,617 + PP_2593 0.67 -3.1
2,963,617 + PP_2593 0.67 -1.6
2,963,618 - -1.1
2,963,709 - PP_2593 0.76 -2.4
2,963,721 - PP_2593 0.78 -2.9
2,963,847 - -0.3
2,963,847 - -1.7
2,964,193 - PP_2594 0.28 +2.8
2,964,226 + PP_2594 0.32 +1.4
2,964,226 + PP_2594 0.32 -1.1
2,964,289 + PP_2594 0.38 -3.1
2,964,289 + PP_2594 0.38 -0.7
2,964,295 + PP_2594 0.39 -1.4
2,964,296 - PP_2594 0.39 -1.2
2,964,296 - PP_2594 0.39 -1.1
2,964,296 - PP_2594 0.39 +0.2
2,964,410 - PP_2594 0.51 -3.2
2,964,415 + PP_2594 0.52 -3.4
2,964,415 + PP_2594 0.52 -3.6
2,964,416 - PP_2594 0.52 -0.4
2,964,449 - PP_2594 0.55 -0.7
2,964,493 - PP_2594 0.60 -3.4
2,964,714 + PP_2594 0.83 -0.0
2,964,715 - PP_2594 0.84 +0.8
2,964,779 + +0.6

Or see this region's nucleotide sequence