Strain Fitness in Pseudomonas putida KT2440 around PP_2535

Experiment: P. putida Missley MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2534 and PP_2535 are separated by 94 nucleotidesPP_2535 and PP_2536 are separated by 53 nucleotidesPP_2536 and PP_2537 are separated by 192 nucleotides PP_2534: PP_2534 - Transcriptional regulator, LysR family, at 2,879,165 to 2,880,064 _2534 PP_2535: PP_2535 - putative inner membrane transport protein, at 2,880,159 to 2,881,334 _2535 PP_2536: PP_2536 - Glutathione S-transferase family protein, at 2,881,388 to 2,882,011 _2536 PP_2537: PP_2537 - conserved protein of unknown function, at 2,882,204 to 2,882,512 _2537 Position (kb) 2880 2881 2882Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2879.167 kb on - strandat 2879.180 kb on + strandat 2879.181 kb on - strandat 2879.281 kb on - strand, within PP_2534at 2879.281 kb on - strand, within PP_2534at 2879.281 kb on - strand, within PP_2534at 2879.281 kb on - strand, within PP_2534at 2879.333 kb on - strand, within PP_2534at 2879.406 kb on - strand, within PP_2534at 2879.408 kb on - strand, within PP_2534at 2879.434 kb on + strand, within PP_2534at 2879.434 kb on + strand, within PP_2534at 2879.434 kb on + strand, within PP_2534at 2879.435 kb on - strand, within PP_2534at 2879.435 kb on - strand, within PP_2534at 2879.535 kb on + strand, within PP_2534at 2879.536 kb on - strand, within PP_2534at 2879.548 kb on - strand, within PP_2534at 2879.548 kb on - strand, within PP_2534at 2879.657 kb on + strand, within PP_2534at 2879.658 kb on - strand, within PP_2534at 2879.658 kb on - strand, within PP_2534at 2879.863 kb on - strand, within PP_2534at 2880.105 kb on + strandat 2880.105 kb on + strandat 2880.105 kb on + strandat 2880.105 kb on + strandat 2880.105 kb on + strandat 2880.105 kb on + strandat 2880.106 kb on - strandat 2880.106 kb on - strandat 2880.128 kb on + strandat 2880.146 kb on + strandat 2880.146 kb on + strandat 2880.146 kb on + strandat 2880.146 kb on + strandat 2880.164 kb on + strandat 2880.304 kb on - strand, within PP_2535at 2880.304 kb on - strand, within PP_2535at 2880.304 kb on - strand, within PP_2535at 2880.304 kb on - strand, within PP_2535at 2880.435 kb on + strand, within PP_2535at 2880.436 kb on - strand, within PP_2535at 2880.691 kb on - strand, within PP_2535at 2880.825 kb on + strand, within PP_2535at 2880.826 kb on - strand, within PP_2535at 2880.826 kb on - strand, within PP_2535at 2880.826 kb on - strand, within PP_2535at 2881.270 kb on + strandat 2881.271 kb on - strandat 2881.271 kb on - strandat 2881.309 kb on + strandat 2881.310 kb on - strandat 2881.332 kb on + strandat 2881.333 kb on - strandat 2881.333 kb on - strandat 2881.333 kb on - strandat 2881.371 kb on - strandat 2881.371 kb on - strandat 2881.371 kb on - strandat 2881.386 kb on + strandat 2881.389 kb on + strandat 2881.390 kb on - strandat 2881.446 kb on + strandat 2881.446 kb on + strandat 2881.447 kb on - strandat 2881.447 kb on - strandat 2881.447 kb on - strandat 2881.557 kb on + strand, within PP_2536at 2881.557 kb on + strand, within PP_2536at 2881.557 kb on + strand, within PP_2536at 2881.557 kb on + strand, within PP_2536at 2881.558 kb on - strand, within PP_2536at 2881.558 kb on - strand, within PP_2536at 2881.558 kb on - strand, within PP_2536at 2881.599 kb on + strand, within PP_2536at 2881.683 kb on + strand, within PP_2536at 2881.683 kb on + strand, within PP_2536at 2881.797 kb on + strand, within PP_2536at 2881.810 kb on + strand, within PP_2536at 2881.811 kb on - strand, within PP_2536at 2881.961 kb on + strandat 2881.961 kb on + strandat 2881.961 kb on + strandat 2881.962 kb on - strandat 2882.112 kb on + strandat 2882.112 kb on + strandat 2882.112 kb on + strandat 2882.112 kb on + strandat 2882.113 kb on - strandat 2882.124 kb on + strandat 2882.156 kb on - strandat 2882.156 kb on - strandat 2882.156 kb on - strandat 2882.156 kb on - strandat 2882.156 kb on - strandat 2882.163 kb on + strandat 2882.164 kb on - strandat 2882.164 kb on - strandat 2882.167 kb on - strandat 2882.247 kb on - strand, within PP_2537

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1
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2,879,167 - -3.9
2,879,180 + +2.2
2,879,181 - -0.4
2,879,281 - PP_2534 0.13 +1.1
2,879,281 - PP_2534 0.13 -1.7
2,879,281 - PP_2534 0.13 +0.9
2,879,281 - PP_2534 0.13 -3.3
2,879,333 - PP_2534 0.19 -3.3
2,879,406 - PP_2534 0.27 +1.0
2,879,408 - PP_2534 0.27 -0.2
2,879,434 + PP_2534 0.30 -1.6
2,879,434 + PP_2534 0.30 +0.5
2,879,434 + PP_2534 0.30 -3.4
2,879,435 - PP_2534 0.30 +1.5
2,879,435 - PP_2534 0.30 -2.1
2,879,535 + PP_2534 0.41 +0.1
2,879,536 - PP_2534 0.41 -0.4
2,879,548 - PP_2534 0.43 -4.1
2,879,548 - PP_2534 0.43 +0.9
2,879,657 + PP_2534 0.55 -3.2
2,879,658 - PP_2534 0.55 -3.0
2,879,658 - PP_2534 0.55 -0.9
2,879,863 - PP_2534 0.78 -2.6
2,880,105 + -0.7
2,880,105 + +0.2
2,880,105 + -1.7
2,880,105 + +0.5
2,880,105 + -0.1
2,880,105 + +1.4
2,880,106 - -0.6
2,880,106 - -0.6
2,880,128 + -2.6
2,880,146 + +1.6
2,880,146 + -2.6
2,880,146 + +2.2
2,880,146 + +2.2
2,880,164 + -0.6
2,880,304 - PP_2535 0.12 -0.9
2,880,304 - PP_2535 0.12 -1.8
2,880,304 - PP_2535 0.12 -0.8
2,880,304 - PP_2535 0.12 +0.3
2,880,435 + PP_2535 0.23 -2.5
2,880,436 - PP_2535 0.24 -3.5
2,880,691 - PP_2535 0.45 -3.6
2,880,825 + PP_2535 0.57 -3.6
2,880,826 - PP_2535 0.57 -3.5
2,880,826 - PP_2535 0.57 +2.1
2,880,826 - PP_2535 0.57 -1.0
2,881,270 + -3.0
2,881,271 - -3.1
2,881,271 - -2.5
2,881,309 + +1.5
2,881,310 - -2.0
2,881,332 + -2.9
2,881,333 - -1.9
2,881,333 - -3.1
2,881,333 - +1.7
2,881,371 - +0.0
2,881,371 - -2.5
2,881,371 - -2.3
2,881,386 + -1.0
2,881,389 + -1.2
2,881,390 - -0.7
2,881,446 + -0.6
2,881,446 + +0.6
2,881,447 - -3.3
2,881,447 - +1.1
2,881,447 - -0.4
2,881,557 + PP_2536 0.27 +0.8
2,881,557 + PP_2536 0.27 -2.5
2,881,557 + PP_2536 0.27 +0.9
2,881,557 + PP_2536 0.27 -3.6
2,881,558 - PP_2536 0.27 -3.0
2,881,558 - PP_2536 0.27 -0.9
2,881,558 - PP_2536 0.27 -1.5
2,881,599 + PP_2536 0.34 +1.0
2,881,683 + PP_2536 0.47 +2.8
2,881,683 + PP_2536 0.47 -0.8
2,881,797 + PP_2536 0.66 +0.8
2,881,810 + PP_2536 0.68 -1.1
2,881,811 - PP_2536 0.68 -3.4
2,881,961 + +0.2
2,881,961 + +0.4
2,881,961 + -1.9
2,881,962 - -0.4
2,882,112 + -3.3
2,882,112 + -1.5
2,882,112 + -3.8
2,882,112 + +0.4
2,882,113 - +1.1
2,882,124 + -0.3
2,882,156 - +1.9
2,882,156 - +1.7
2,882,156 - +4.0
2,882,156 - -3.3
2,882,156 - -2.2
2,882,163 + -1.2
2,882,164 - +0.3
2,882,164 - -0.1
2,882,167 - -4.5
2,882,247 - PP_2537 0.14 -1.2

Or see this region's nucleotide sequence