Strain Fitness in Pseudomonas putida KT2440 around PP_2126

Experiment: P. putida Missley MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2125 and PP_2126 overlap by 17 nucleotidesPP_2126 and PP_2127 overlap by 11 nucleotides PP_2125: PP_2125 - lipid kinase, at 2,424,390 to 2,425,319 _2125 PP_2126: PP_2126 - DNA-binding response regulator, LuxR family, at 2,425,303 to 2,425,962 _2126 PP_2127: PP_2127 - Sensor histidine kinase, at 2,425,952 to 2,426,893 _2127 Position (kb) 2425 2426Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2424.400 kb on + strandat 2424.401 kb on - strandat 2424.538 kb on + strand, within PP_2125at 2424.539 kb on - strand, within PP_2125at 2424.539 kb on - strand, within PP_2125at 2424.600 kb on + strand, within PP_2125at 2424.866 kb on + strand, within PP_2125at 2424.867 kb on - strand, within PP_2125at 2424.867 kb on - strand, within PP_2125at 2424.906 kb on + strand, within PP_2125at 2424.941 kb on - strand, within PP_2125at 2424.955 kb on + strand, within PP_2125at 2424.956 kb on - strand, within PP_2125at 2424.961 kb on + strand, within PP_2125at 2424.961 kb on + strand, within PP_2125at 2425.088 kb on + strand, within PP_2125at 2425.357 kb on + strandat 2425.503 kb on + strand, within PP_2126at 2425.590 kb on - strand, within PP_2126at 2425.606 kb on + strand, within PP_2126at 2425.658 kb on + strand, within PP_2126at 2425.737 kb on + strand, within PP_2126at 2425.737 kb on + strand, within PP_2126at 2425.831 kb on + strand, within PP_2126at 2425.831 kb on + strand, within PP_2126at 2425.831 kb on + strand, within PP_2126at 2425.831 kb on + strand, within PP_2126at 2425.832 kb on - strand, within PP_2126at 2425.843 kb on + strand, within PP_2126at 2425.940 kb on - strandat 2425.940 kb on - strandat 2425.940 kb on - strandat 2425.948 kb on + strandat 2425.948 kb on + strandat 2425.948 kb on + strandat 2425.949 kb on - strandat 2425.953 kb on + strandat 2425.969 kb on + strandat 2425.970 kb on - strandat 2426.260 kb on + strand, within PP_2127at 2426.260 kb on + strand, within PP_2127at 2426.260 kb on + strand, within PP_2127at 2426.261 kb on - strand, within PP_2127at 2426.354 kb on + strand, within PP_2127at 2426.670 kb on - strand, within PP_2127at 2426.848 kb on + strandat 2426.848 kb on + strandat 2426.848 kb on + strandat 2426.848 kb on + strandat 2426.848 kb on + strandat 2426.849 kb on - strandat 2426.849 kb on - strandat 2426.849 kb on - strandat 2426.849 kb on - strandat 2426.849 kb on - strandat 2426.852 kb on + strandat 2426.869 kb on + strandat 2426.870 kb on - strandat 2426.943 kb on + strandat 2426.944 kb on - strandat 2426.944 kb on - strandat 2426.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1
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2,424,400 + +0.5
2,424,401 - -2.8
2,424,538 + PP_2125 0.16 +0.1
2,424,539 - PP_2125 0.16 +1.0
2,424,539 - PP_2125 0.16 -0.1
2,424,600 + PP_2125 0.23 +1.6
2,424,866 + PP_2125 0.51 +0.8
2,424,867 - PP_2125 0.51 -1.9
2,424,867 - PP_2125 0.51 -1.0
2,424,906 + PP_2125 0.55 +0.9
2,424,941 - PP_2125 0.59 +0.1
2,424,955 + PP_2125 0.61 +3.9
2,424,956 - PP_2125 0.61 -0.7
2,424,961 + PP_2125 0.61 +0.3
2,424,961 + PP_2125 0.61 -3.9
2,425,088 + PP_2125 0.75 +1.5
2,425,357 + -3.0
2,425,503 + PP_2126 0.30 -2.3
2,425,590 - PP_2126 0.43 -4.0
2,425,606 + PP_2126 0.46 -4.0
2,425,658 + PP_2126 0.54 -2.9
2,425,737 + PP_2126 0.66 -3.1
2,425,737 + PP_2126 0.66 +0.6
2,425,831 + PP_2126 0.80 +0.3
2,425,831 + PP_2126 0.80 +0.2
2,425,831 + PP_2126 0.80 -4.1
2,425,831 + PP_2126 0.80 -3.5
2,425,832 - PP_2126 0.80 -3.3
2,425,843 + PP_2126 0.82 -1.4
2,425,940 - -2.7
2,425,940 - +1.0
2,425,940 - +0.9
2,425,948 + +2.4
2,425,948 + +0.9
2,425,948 + +0.3
2,425,949 - +0.2
2,425,953 + +0.5
2,425,969 + -3.4
2,425,970 - +0.5
2,426,260 + PP_2127 0.33 -3.8
2,426,260 + PP_2127 0.33 -0.9
2,426,260 + PP_2127 0.33 -3.8
2,426,261 - PP_2127 0.33 -0.7
2,426,354 + PP_2127 0.43 -4.0
2,426,670 - PP_2127 0.76 +0.5
2,426,848 + -2.4
2,426,848 + +0.3
2,426,848 + -0.5
2,426,848 + -3.6
2,426,848 + +0.1
2,426,849 - +0.5
2,426,849 - +1.4
2,426,849 - +2.5
2,426,849 - -2.1
2,426,849 - +0.9
2,426,852 + -3.5
2,426,869 + +1.4
2,426,870 - +0.1
2,426,943 + -1.6
2,426,944 - +1.1
2,426,944 - +1.9
2,426,944 - +2.1

Or see this region's nucleotide sequence