Experiment: P. putida Missley MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0216 and PP_0217 are separated by 99 nucleotides PP_0217 and PP_0218 are separated by 146 nucleotides
PP_0216: PP_0216 - putative sensory box/GGDEF family protein, at 267,641 to 268,669
_0216
PP_0217: PP_0217 - delta-9 fatty acid desaturase, at 268,769 to 269,953
_0217
PP_0218: PP_0218 - Sensory box protein, at 270,100 to 271,995
_0218
Position (kb)
268
269
270 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 267.809 kb on + strand, within PP_0216 at 267.809 kb on + strand, within PP_0216 at 267.810 kb on - strand, within PP_0216 at 267.810 kb on - strand, within PP_0216 at 267.810 kb on - strand, within PP_0216 at 267.856 kb on + strand, within PP_0216 at 267.981 kb on + strand, within PP_0216 at 267.981 kb on + strand, within PP_0216 at 267.981 kb on + strand, within PP_0216 at 267.981 kb on + strand, within PP_0216 at 267.981 kb on + strand, within PP_0216 at 267.981 kb on + strand, within PP_0216 at 267.981 kb on + strand, within PP_0216 at 267.981 kb on + strand, within PP_0216 at 267.981 kb on + strand, within PP_0216 at 267.981 kb on + strand, within PP_0216 at 267.982 kb on - strand, within PP_0216 at 267.982 kb on - strand, within PP_0216 at 267.982 kb on - strand, within PP_0216 at 267.982 kb on - strand, within PP_0216 at 267.982 kb on - strand, within PP_0216 at 267.982 kb on - strand, within PP_0216 at 268.039 kb on + strand, within PP_0216 at 268.039 kb on + strand, within PP_0216 at 268.039 kb on + strand, within PP_0216 at 268.039 kb on + strand, within PP_0216 at 268.039 kb on + strand, within PP_0216 at 268.040 kb on - strand, within PP_0216 at 268.227 kb on + strand, within PP_0216 at 268.227 kb on + strand, within PP_0216 at 268.228 kb on - strand, within PP_0216 at 268.228 kb on - strand, within PP_0216 at 268.228 kb on - strand, within PP_0216 at 268.228 kb on - strand, within PP_0216 at 268.310 kb on + strand, within PP_0216 at 268.310 kb on + strand, within PP_0216 at 268.311 kb on - strand, within PP_0216 at 268.354 kb on - strand, within PP_0216 at 268.378 kb on - strand, within PP_0216 at 268.422 kb on + strand, within PP_0216 at 268.423 kb on - strand, within PP_0216 at 268.437 kb on + strand, within PP_0216 at 268.437 kb on + strand, within PP_0216 at 268.437 kb on + strand, within PP_0216 at 268.437 kb on + strand, within PP_0216 at 268.437 kb on + strand, within PP_0216 at 268.438 kb on - strand, within PP_0216 at 268.565 kb on + strand, within PP_0216 at 268.565 kb on + strand, within PP_0216 at 268.691 kb on - strand at 268.691 kb on - strand at 268.794 kb on + strand at 268.856 kb on + strand at 268.857 kb on - strand at 268.857 kb on - strand at 268.857 kb on - strand at 268.942 kb on - strand, within PP_0217 at 269.319 kb on + strand, within PP_0217 at 269.375 kb on + strand, within PP_0217 at 269.376 kb on - strand, within PP_0217 at 269.486 kb on + strand, within PP_0217 at 269.486 kb on + strand, within PP_0217 at 269.486 kb on + strand, within PP_0217 at 269.498 kb on + strand, within PP_0217 at 269.498 kb on + strand, within PP_0217 at 269.498 kb on + strand, within PP_0217 at 269.498 kb on + strand, within PP_0217 at 269.498 kb on + strand, within PP_0217 at 269.499 kb on - strand, within PP_0217 at 269.499 kb on - strand, within PP_0217 at 269.499 kb on - strand, within PP_0217 at 269.608 kb on - strand, within PP_0217 at 269.608 kb on - strand, within PP_0217 at 269.608 kb on - strand, within PP_0217 at 269.608 kb on - strand, within PP_0217 at 269.647 kb on - strand, within PP_0217 at 269.689 kb on - strand, within PP_0217 at 269.859 kb on + strand at 269.860 kb on - strand at 269.944 kb on + strand at 269.944 kb on + strand at 269.945 kb on - strand at 269.946 kb on + strand at 269.946 kb on + strand at 269.946 kb on + strand at 269.947 kb on - strand at 269.947 kb on - strand at 269.947 kb on - strand at 269.947 kb on - strand at 269.947 kb on - strand at 269.953 kb on + strand at 269.953 kb on + strand at 269.953 kb on + strand at 269.953 kb on + strand at 269.953 kb on + strand at 269.953 kb on + strand at 269.954 kb on - strand at 269.954 kb on - strand at 269.954 kb on - strand at 269.954 kb on - strand at 269.963 kb on + strand at 269.963 kb on + strand at 269.963 kb on + strand at 269.964 kb on - strand at 269.994 kb on - strand at 269.994 kb on - strand at 270.011 kb on + strand at 270.033 kb on + strand at 270.033 kb on + strand at 270.033 kb on + strand at 270.034 kb on - strand at 270.061 kb on - strand at 270.061 kb on - strand at 270.062 kb on + strand at 270.062 kb on + strand at 270.062 kb on + strand at 270.062 kb on - strand at 270.063 kb on - strand at 270.142 kb on + strand at 270.142 kb on + strand at 270.143 kb on - strand at 270.143 kb on - strand at 270.277 kb on + strand at 270.277 kb on + strand at 270.277 kb on + strand at 270.277 kb on + strand at 270.277 kb on + strand at 270.277 kb on + strand at 270.277 kb on + strand at 270.277 kb on + strand at 270.278 kb on - strand at 270.278 kb on - strand at 270.278 kb on - strand at 270.458 kb on - strand, within PP_0218 at 270.458 kb on - strand, within PP_0218 at 270.526 kb on + strand, within PP_0218 at 270.527 kb on - strand, within PP_0218 at 270.527 kb on - strand, within PP_0218 at 270.608 kb on - strand, within PP_0218 at 270.664 kb on + strand, within PP_0218 at 270.664 kb on + strand, within PP_0218 at 270.665 kb on - strand, within PP_0218 at 270.721 kb on + strand, within PP_0218 at 270.863 kb on + strand, within PP_0218 at 270.864 kb on - strand, within PP_0218 at 270.864 kb on - strand, within PP_0218 at 270.864 kb on - strand, within PP_0218 at 270.864 kb on - strand, within PP_0218 at 270.882 kb on + strand, within PP_0218 at 270.883 kb on - strand, within PP_0218 at 270.883 kb on - strand, within PP_0218
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Missley MOI 0.1 remove 267,809 + PP_0216 0.16 -2.6 267,809 + PP_0216 0.16 -0.6 267,810 - PP_0216 0.16 -0.6 267,810 - PP_0216 0.16 +0.4 267,810 - PP_0216 0.16 +0.8 267,856 + PP_0216 0.21 -1.2 267,981 + PP_0216 0.33 -1.3 267,981 + PP_0216 0.33 -3.5 267,981 + PP_0216 0.33 +0.9 267,981 + PP_0216 0.33 -0.1 267,981 + PP_0216 0.33 +0.1 267,981 + PP_0216 0.33 -1.2 267,981 + PP_0216 0.33 +1.1 267,981 + PP_0216 0.33 -4.0 267,981 + PP_0216 0.33 +0.5 267,981 + PP_0216 0.33 +0.6 267,982 - PP_0216 0.33 -3.3 267,982 - PP_0216 0.33 +0.4 267,982 - PP_0216 0.33 -0.8 267,982 - PP_0216 0.33 -4.9 267,982 - PP_0216 0.33 -0.9 267,982 - PP_0216 0.33 -4.9 268,039 + PP_0216 0.39 -2.5 268,039 + PP_0216 0.39 -3.2 268,039 + PP_0216 0.39 +0.7 268,039 + PP_0216 0.39 -0.8 268,039 + PP_0216 0.39 +0.2 268,040 - PP_0216 0.39 -1.9 268,227 + PP_0216 0.57 -4.0 268,227 + PP_0216 0.57 -0.5 268,228 - PP_0216 0.57 +0.6 268,228 - PP_0216 0.57 -3.7 268,228 - PP_0216 0.57 -0.1 268,228 - PP_0216 0.57 -3.0 268,310 + PP_0216 0.65 +0.3 268,310 + PP_0216 0.65 -0.5 268,311 - PP_0216 0.65 -3.2 268,354 - PP_0216 0.69 -1.1 268,378 - PP_0216 0.72 +0.7 268,422 + PP_0216 0.76 +0.2 268,423 - PP_0216 0.76 -3.8 268,437 + PP_0216 0.77 +0.3 268,437 + PP_0216 0.77 -0.7 268,437 + PP_0216 0.77 -0.5 268,437 + PP_0216 0.77 -3.2 268,437 + PP_0216 0.77 -3.2 268,438 - PP_0216 0.77 -1.7 268,565 + PP_0216 0.90 -0.0 268,565 + PP_0216 0.90 -2.3 268,691 - +0.4 268,691 - +0.3 268,794 + -1.2 268,856 + -3.4 268,857 - -3.9 268,857 - -1.2 268,857 - -3.7 268,942 - PP_0217 0.15 -3.3 269,319 + PP_0217 0.46 -3.3 269,375 + PP_0217 0.51 -2.0 269,376 - PP_0217 0.51 -3.9 269,486 + PP_0217 0.61 -1.2 269,486 + PP_0217 0.61 -2.6 269,486 + PP_0217 0.61 +0.1 269,498 + PP_0217 0.62 -3.6 269,498 + PP_0217 0.62 -3.8 269,498 + PP_0217 0.62 +1.9 269,498 + PP_0217 0.62 -1.8 269,498 + PP_0217 0.62 +0.1 269,499 - PP_0217 0.62 -3.9 269,499 - PP_0217 0.62 -3.8 269,499 - PP_0217 0.62 -0.7 269,608 - PP_0217 0.71 +0.3 269,608 - PP_0217 0.71 -2.7 269,608 - PP_0217 0.71 -1.7 269,608 - PP_0217 0.71 +0.1 269,647 - PP_0217 0.74 -3.7 269,689 - PP_0217 0.78 -3.5 269,859 + +0.1 269,860 - -4.3 269,944 + -0.4 269,944 + -1.0 269,945 - -3.0 269,946 + -3.9 269,946 + +0.6 269,946 + -2.6 269,947 - -1.4 269,947 - +0.2 269,947 - -3.2 269,947 - -2.6 269,947 - -1.0 269,953 + -4.3 269,953 + -0.1 269,953 + -0.8 269,953 + +1.6 269,953 + -4.0 269,953 + +1.3 269,954 - -3.4 269,954 - -2.0 269,954 - -1.6 269,954 - -3.2 269,963 + -0.3 269,963 + -0.5 269,963 + +0.4 269,964 - -3.0 269,994 - +0.5 269,994 - -2.0 270,011 + +1.7 270,033 + +0.9 270,033 + -1.0 270,033 + -0.3 270,034 - -3.1 270,061 - -0.3 270,061 - +2.0 270,062 + -0.1 270,062 + -4.2 270,062 + +1.6 270,062 - +0.8 270,063 - +0.5 270,142 + -0.4 270,142 + +0.3 270,143 - -1.9 270,143 - -4.3 270,277 + +1.0 270,277 + -1.7 270,277 + -3.0 270,277 + -2.9 270,277 + -2.3 270,277 + -2.5 270,277 + +0.7 270,277 + -2.3 270,278 - -2.6 270,278 - -1.4 270,278 - +1.1 270,458 - PP_0218 0.19 +0.4 270,458 - PP_0218 0.19 -1.8 270,526 + PP_0218 0.22 -1.7 270,527 - PP_0218 0.23 +1.8 270,527 - PP_0218 0.23 -2.6 270,608 - PP_0218 0.27 -2.6 270,664 + PP_0218 0.30 -2.9 270,664 + PP_0218 0.30 -2.9 270,665 - PP_0218 0.30 +2.6 270,721 + PP_0218 0.33 -2.5 270,863 + PP_0218 0.40 -2.4 270,864 - PP_0218 0.40 -2.5 270,864 - PP_0218 0.40 +5.8 270,864 - PP_0218 0.40 +0.4 270,864 - PP_0218 0.40 +1.5 270,882 + PP_0218 0.41 +0.6 270,883 - PP_0218 0.41 +0.3 270,883 - PP_0218 0.41 -3.2
Or see this region's nucleotide sequence