Experiment: carbon source D-Glucose 0.25mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yagW and yagX overlap by 11 nucleotides yagX and yagY are separated by 25 nucleotides yagY and yagZ are separated by 57 nucleotides
b0290: yagW - predicted receptor (NCBI), at 304,398 to 306,041
yagW
b0291: yagX - predicted aromatic compound dioxygenase (NCBI), at 306,031 to 308,556
yagX
b0292: yagY - hypothetical protein (NCBI), at 308,582 to 309,250
yagY
b0293: yagZ - hypothetical protein (NCBI), at 309,308 to 309,895
yagZ
Position (kb) 306
307
308
309 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 305.031 kb on - strand, within yagW at 305.103 kb on - strand, within yagW at 305.136 kb on + strand, within yagW at 305.148 kb on + strand, within yagW at 305.148 kb on + strand, within yagW at 305.189 kb on + strand, within yagW at 305.189 kb on + strand, within yagW at 305.246 kb on + strand, within yagW at 305.454 kb on - strand, within yagW at 305.495 kb on - strand, within yagW at 305.495 kb on - strand, within yagW at 305.496 kb on + strand, within yagW at 305.510 kb on + strand, within yagW at 305.545 kb on + strand, within yagW at 305.545 kb on + strand, within yagW at 305.577 kb on + strand, within yagW at 305.676 kb on + strand, within yagW at 305.700 kb on + strand, within yagW at 305.708 kb on - strand, within yagW at 305.836 kb on - strand, within yagW at 305.836 kb on - strand, within yagW at 305.839 kb on + strand, within yagW at 306.000 kb on - strand at 306.069 kb on + strand at 306.069 kb on + strand at 306.086 kb on + strand at 306.094 kb on - strand at 306.251 kb on + strand at 306.457 kb on + strand, within yagX at 306.475 kb on - strand, within yagX at 306.526 kb on + strand, within yagX at 306.759 kb on - strand, within yagX at 306.777 kb on - strand, within yagX at 306.953 kb on - strand, within yagX at 307.033 kb on - strand, within yagX at 307.053 kb on + strand, within yagX at 307.053 kb on + strand, within yagX at 307.114 kb on + strand, within yagX at 307.115 kb on - strand, within yagX at 307.200 kb on - strand, within yagX at 307.265 kb on - strand, within yagX at 307.265 kb on - strand, within yagX at 307.325 kb on + strand, within yagX at 307.335 kb on + strand, within yagX at 307.349 kb on + strand, within yagX at 307.352 kb on + strand, within yagX at 307.352 kb on + strand, within yagX at 307.388 kb on - strand, within yagX at 307.388 kb on - strand, within yagX at 307.395 kb on + strand, within yagX at 307.645 kb on - strand, within yagX at 307.645 kb on - strand, within yagX at 307.658 kb on - strand, within yagX at 307.662 kb on + strand, within yagX at 307.662 kb on + strand, within yagX at 307.663 kb on - strand, within yagX at 307.770 kb on + strand, within yagX at 307.911 kb on - strand, within yagX at 307.911 kb on - strand, within yagX at 307.958 kb on - strand, within yagX at 308.053 kb on - strand, within yagX at 308.102 kb on - strand, within yagX at 308.102 kb on - strand, within yagX at 308.218 kb on - strand, within yagX at 308.218 kb on - strand, within yagX at 308.266 kb on - strand, within yagX at 308.376 kb on + strand at 308.381 kb on - strand at 308.381 kb on - strand at 308.457 kb on + strand at 308.529 kb on + strand at 308.529 kb on + strand at 308.585 kb on - strand at 308.711 kb on - strand, within yagY at 308.739 kb on - strand, within yagY at 308.807 kb on + strand, within yagY at 308.835 kb on + strand, within yagY at 308.835 kb on + strand, within yagY at 308.957 kb on + strand, within yagY at 308.957 kb on + strand, within yagY at 308.957 kb on + strand, within yagY at 308.984 kb on + strand, within yagY at 309.053 kb on - strand, within yagY at 309.149 kb on + strand, within yagY at 309.158 kb on - strand, within yagY at 309.166 kb on - strand, within yagY at 309.300 kb on - strand at 309.312 kb on - strand at 309.370 kb on - strand, within yagZ at 309.370 kb on - strand, within yagZ at 309.401 kb on - strand, within yagZ at 309.401 kb on - strand, within yagZ at 309.435 kb on - strand, within yagZ at 309.515 kb on - strand, within yagZ at 309.532 kb on - strand, within yagZ at 309.552 kb on + strand, within yagZ
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source D-Glucose 0.25mM remove 305,031 - yagW b0290 0.39 +0.5 305,103 - yagW b0290 0.43 -1.8 305,136 + yagW b0290 0.45 +1.0 305,148 + yagW b0290 0.46 +1.4 305,148 + yagW b0290 0.46 +0.7 305,189 + yagW b0290 0.48 -3.3 305,189 + yagW b0290 0.48 -4.0 305,246 + yagW b0290 0.52 -1.0 305,454 - yagW b0290 0.64 +0.1 305,495 - yagW b0290 0.67 -0.8 305,495 - yagW b0290 0.67 +0.2 305,496 + yagW b0290 0.67 -2.1 305,510 + yagW b0290 0.68 -0.3 305,545 + yagW b0290 0.70 -2.4 305,545 + yagW b0290 0.70 +1.3 305,577 + yagW b0290 0.72 +1.1 305,676 + yagW b0290 0.78 +1.6 305,700 + yagW b0290 0.79 +0.7 305,708 - yagW b0290 0.80 +3.4 305,836 - yagW b0290 0.87 -1.5 305,836 - yagW b0290 0.87 +2.6 305,839 + yagW b0290 0.88 -0.8 306,000 - -2.1 306,069 + +1.9 306,069 + -1.6 306,086 + -0.2 306,094 - +1.2 306,251 + +1.3 306,457 + yagX b0291 0.17 +1.1 306,475 - yagX b0291 0.18 +2.4 306,526 + yagX b0291 0.20 -0.3 306,759 - yagX b0291 0.29 -4.5 306,777 - yagX b0291 0.30 +1.1 306,953 - yagX b0291 0.37 -0.1 307,033 - yagX b0291 0.40 -0.7 307,053 + yagX b0291 0.40 -3.7 307,053 + yagX b0291 0.40 -4.0 307,114 + yagX b0291 0.43 +0.7 307,115 - yagX b0291 0.43 +0.3 307,200 - yagX b0291 0.46 +0.7 307,265 - yagX b0291 0.49 +1.0 307,265 - yagX b0291 0.49 -0.3 307,325 + yagX b0291 0.51 -4.7 307,335 + yagX b0291 0.52 +1.0 307,349 + yagX b0291 0.52 -2.3 307,352 + yagX b0291 0.52 +1.9 307,352 + yagX b0291 0.52 +2.0 307,388 - yagX b0291 0.54 -1.8 307,388 - yagX b0291 0.54 -1.2 307,395 + yagX b0291 0.54 -0.2 307,645 - yagX b0291 0.64 +0.5 307,645 - yagX b0291 0.64 +1.5 307,658 - yagX b0291 0.64 -2.9 307,662 + yagX b0291 0.65 -4.3 307,662 + yagX b0291 0.65 +0.2 307,663 - yagX b0291 0.65 -3.0 307,770 + yagX b0291 0.69 -2.7 307,911 - yagX b0291 0.74 -4.4 307,911 - yagX b0291 0.74 -4.0 307,958 - yagX b0291 0.76 -0.9 308,053 - yagX b0291 0.80 -1.0 308,102 - yagX b0291 0.82 -0.1 308,102 - yagX b0291 0.82 -0.4 308,218 - yagX b0291 0.87 -2.4 308,218 - yagX b0291 0.87 -3.0 308,266 - yagX b0291 0.88 +0.5 308,376 + +0.8 308,381 - +1.9 308,381 - -2.1 308,457 + -0.2 308,529 + +1.6 308,529 + +0.7 308,585 - +0.6 308,711 - yagY b0292 0.19 +2.2 308,739 - yagY b0292 0.23 -2.2 308,807 + yagY b0292 0.34 +1.2 308,835 + yagY b0292 0.38 +1.7 308,835 + yagY b0292 0.38 -2.9 308,957 + yagY b0292 0.56 +0.8 308,957 + yagY b0292 0.56 -0.0 308,957 + yagY b0292 0.56 -0.7 308,984 + yagY b0292 0.60 +0.9 309,053 - yagY b0292 0.70 -0.7 309,149 + yagY b0292 0.85 +1.5 309,158 - yagY b0292 0.86 -3.9 309,166 - yagY b0292 0.87 -0.7 309,300 - -5.4 309,312 - +0.8 309,370 - yagZ b0293 0.11 -3.0 309,370 - yagZ b0293 0.11 +0.9 309,401 - yagZ b0293 0.16 -0.1 309,401 - yagZ b0293 0.16 +1.0 309,435 - yagZ b0293 0.22 +0.9 309,515 - yagZ b0293 0.35 -0.4 309,532 - yagZ b0293 0.38 +2.1 309,552 + yagZ b0293 0.41 -1.2
Or see this region's nucleotide sequence