Strain Fitness in Escherichia coli BW25113 around b3522

Experiment: carbon source D-Glucose 0.25mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhjC and yhjD are separated by 48 nucleotidesyhjD and yhjE are separated by 410 nucleotides b3521: yhjC - predicted DNA-binding transcriptional regulator (RefSeq), at 3,670,437 to 3,671,336 yhjC b3522: yhjD - conserved inner membrane protein (NCBI), at 3,671,385 to 3,672,398 yhjD b3523: yhjE - predicted transporter (NCBI), at 3,672,809 to 3,674,131 yhjE Position (kb) 3671 3672 3673Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3670.518 kb on + strandat 3670.518 kb on + strandat 3670.543 kb on + strand, within yhjCat 3670.560 kb on - strand, within yhjCat 3670.620 kb on - strand, within yhjCat 3670.701 kb on + strand, within yhjCat 3670.733 kb on + strand, within yhjCat 3670.758 kb on - strand, within yhjCat 3670.811 kb on + strand, within yhjCat 3670.819 kb on - strand, within yhjCat 3670.839 kb on + strand, within yhjCat 3670.839 kb on + strand, within yhjCat 3670.893 kb on + strand, within yhjCat 3670.950 kb on + strand, within yhjCat 3670.983 kb on + strand, within yhjCat 3671.006 kb on + strand, within yhjCat 3671.006 kb on + strand, within yhjCat 3671.006 kb on + strand, within yhjCat 3671.007 kb on - strand, within yhjCat 3671.008 kb on + strand, within yhjCat 3671.008 kb on + strand, within yhjCat 3671.008 kb on + strand, within yhjCat 3671.024 kb on - strand, within yhjCat 3671.026 kb on + strand, within yhjCat 3671.026 kb on + strand, within yhjCat 3671.038 kb on - strand, within yhjCat 3671.038 kb on - strand, within yhjCat 3671.040 kb on + strand, within yhjCat 3671.040 kb on + strand, within yhjCat 3671.074 kb on + strand, within yhjCat 3671.074 kb on + strand, within yhjCat 3671.097 kb on + strand, within yhjCat 3671.097 kb on + strand, within yhjCat 3671.184 kb on - strand, within yhjCat 3671.281 kb on + strandat 3671.324 kb on + strandat 3671.324 kb on - strandat 3671.324 kb on - strandat 3671.333 kb on - strandat 3671.333 kb on - strandat 3671.333 kb on - strandat 3671.358 kb on + strandat 3671.358 kb on + strandat 3671.450 kb on + strandat 3671.492 kb on - strand, within yhjDat 3671.503 kb on - strand, within yhjDat 3671.503 kb on - strand, within yhjDat 3671.556 kb on + strand, within yhjDat 3671.586 kb on - strand, within yhjDat 3671.597 kb on + strand, within yhjDat 3671.662 kb on + strand, within yhjDat 3671.865 kb on - strand, within yhjDat 3671.891 kb on - strand, within yhjDat 3671.923 kb on - strand, within yhjDat 3672.046 kb on + strand, within yhjDat 3672.069 kb on + strand, within yhjDat 3672.096 kb on + strand, within yhjDat 3672.226 kb on + strand, within yhjDat 3672.232 kb on - strand, within yhjDat 3672.232 kb on - strand, within yhjDat 3672.233 kb on - strand, within yhjDat 3672.279 kb on + strand, within yhjDat 3672.279 kb on + strand, within yhjDat 3672.288 kb on - strand, within yhjDat 3672.288 kb on - strand, within yhjDat 3672.326 kb on + strandat 3672.336 kb on + strandat 3672.416 kb on + strandat 3672.435 kb on - strandat 3672.459 kb on + strandat 3672.466 kb on - strandat 3672.501 kb on - strandat 3672.514 kb on - strandat 3672.586 kb on - strandat 3672.820 kb on + strandat 3672.823 kb on + strandat 3672.824 kb on + strandat 3672.944 kb on - strand, within yhjEat 3672.944 kb on - strand, within yhjEat 3673.041 kb on + strand, within yhjEat 3673.133 kb on + strand, within yhjEat 3673.133 kb on + strand, within yhjEat 3673.145 kb on - strand, within yhjEat 3673.238 kb on - strand, within yhjEat 3673.281 kb on + strand, within yhjEat 3673.289 kb on - strand, within yhjEat 3673.289 kb on - strand, within yhjEat 3673.289 kb on - strand, within yhjEat 3673.297 kb on - strand, within yhjEat 3673.297 kb on - strand, within yhjEat 3673.299 kb on - strand, within yhjEat 3673.299 kb on - strand, within yhjEat 3673.299 kb on - strand, within yhjEat 3673.299 kb on - strand, within yhjEat 3673.299 kb on - strand, within yhjEat 3673.299 kb on - strand, within yhjEat 3673.310 kb on - strand, within yhjEat 3673.310 kb on - strand, within yhjE

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 0.25mM
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3,670,518 + -3.7
3,670,518 + +0.7
3,670,543 + yhjC b3521 0.12 +0.4
3,670,560 - yhjC b3521 0.14 -0.8
3,670,620 - yhjC b3521 0.20 +1.1
3,670,701 + yhjC b3521 0.29 -2.8
3,670,733 + yhjC b3521 0.33 +1.3
3,670,758 - yhjC b3521 0.36 +0.3
3,670,811 + yhjC b3521 0.42 -2.4
3,670,819 - yhjC b3521 0.42 +0.3
3,670,839 + yhjC b3521 0.45 -0.2
3,670,839 + yhjC b3521 0.45 +0.3
3,670,893 + yhjC b3521 0.51 -1.5
3,670,950 + yhjC b3521 0.57 +0.1
3,670,983 + yhjC b3521 0.61 -0.3
3,671,006 + yhjC b3521 0.63 +1.6
3,671,006 + yhjC b3521 0.63 +0.5
3,671,006 + yhjC b3521 0.63 +0.9
3,671,007 - yhjC b3521 0.63 +1.0
3,671,008 + yhjC b3521 0.63 +0.8
3,671,008 + yhjC b3521 0.63 +0.7
3,671,008 + yhjC b3521 0.63 +1.7
3,671,024 - yhjC b3521 0.65 +2.2
3,671,026 + yhjC b3521 0.65 +1.6
3,671,026 + yhjC b3521 0.65 +2.4
3,671,038 - yhjC b3521 0.67 +2.6
3,671,038 - yhjC b3521 0.67 +0.9
3,671,040 + yhjC b3521 0.67 +0.8
3,671,040 + yhjC b3521 0.67 +1.5
3,671,074 + yhjC b3521 0.71 +0.2
3,671,074 + yhjC b3521 0.71 +0.0
3,671,097 + yhjC b3521 0.73 +1.6
3,671,097 + yhjC b3521 0.73 +1.9
3,671,184 - yhjC b3521 0.83 -3.5
3,671,281 + +3.0
3,671,324 + +1.3
3,671,324 - -1.9
3,671,324 - +1.2
3,671,333 - +1.2
3,671,333 - +0.6
3,671,333 - +0.9
3,671,358 + +0.6
3,671,358 + -3.3
3,671,450 + +0.6
3,671,492 - yhjD b3522 0.11 -2.2
3,671,503 - yhjD b3522 0.12 -3.2
3,671,503 - yhjD b3522 0.12 -1.3
3,671,556 + yhjD b3522 0.17 -3.2
3,671,586 - yhjD b3522 0.20 +0.5
3,671,597 + yhjD b3522 0.21 -0.7
3,671,662 + yhjD b3522 0.27 +3.7
3,671,865 - yhjD b3522 0.47 +0.8
3,671,891 - yhjD b3522 0.50 -3.5
3,671,923 - yhjD b3522 0.53 -1.2
3,672,046 + yhjD b3522 0.65 -5.0
3,672,069 + yhjD b3522 0.67 -4.5
3,672,096 + yhjD b3522 0.70 +0.1
3,672,226 + yhjD b3522 0.83 +0.8
3,672,232 - yhjD b3522 0.84 +0.4
3,672,232 - yhjD b3522 0.84 -1.9
3,672,233 - yhjD b3522 0.84 -0.5
3,672,279 + yhjD b3522 0.88 +1.5
3,672,279 + yhjD b3522 0.88 -2.1
3,672,288 - yhjD b3522 0.89 -1.3
3,672,288 - yhjD b3522 0.89 +0.2
3,672,326 + +0.5
3,672,336 + +0.1
3,672,416 + -4.5
3,672,435 - +0.4
3,672,459 + +0.6
3,672,466 - -3.3
3,672,501 - -5.1
3,672,514 - -0.1
3,672,586 - -2.9
3,672,820 + +1.4
3,672,823 + +0.2
3,672,824 + -1.0
3,672,944 - yhjE b3523 0.10 +2.1
3,672,944 - yhjE b3523 0.10 -2.3
3,673,041 + yhjE b3523 0.18 +1.2
3,673,133 + yhjE b3523 0.24 +1.3
3,673,133 + yhjE b3523 0.24 +0.7
3,673,145 - yhjE b3523 0.25 -0.1
3,673,238 - yhjE b3523 0.32 +1.2
3,673,281 + yhjE b3523 0.36 +2.2
3,673,289 - yhjE b3523 0.36 +0.5
3,673,289 - yhjE b3523 0.36 -4.3
3,673,289 - yhjE b3523 0.36 -4.2
3,673,297 - yhjE b3523 0.37 +1.8
3,673,297 - yhjE b3523 0.37 +0.9
3,673,299 - yhjE b3523 0.37 -2.9
3,673,299 - yhjE b3523 0.37 -0.2
3,673,299 - yhjE b3523 0.37 -2.4
3,673,299 - yhjE b3523 0.37 +1.5
3,673,299 - yhjE b3523 0.37 -2.4
3,673,299 - yhjE b3523 0.37 -2.3
3,673,310 - yhjE b3523 0.38 -0.3
3,673,310 - yhjE b3523 0.38 +1.0

Or see this region's nucleotide sequence