Experiment: carbon source D-Glucose 0.25mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b2659 and ygaF are separated by 19 nucleotides ygaF and gabD are separated by 22 nucleotides
b2659: b2659 - orf, hypothetical protein (VIMSS), at 2,787,007 to 2,787,984
b2659
b2660: ygaF - orf, hypothetical protein (VIMSS), at 2,788,004 to 2,789,272
ygaF
b2661: gabD - succinate-semialdehyde dehydrogenase I, NADP-dependent (NCBI), at 2,789,295 to 2,790,743
gabD
Position (kb)
2788
2789
2790 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2787.071 kb on + strand at 2787.166 kb on + strand, within b2659 at 2787.166 kb on + strand, within b2659 at 2787.265 kb on + strand, within b2659 at 2787.737 kb on - strand, within b2659 at 2788.053 kb on + strand at 2788.138 kb on + strand, within ygaF at 2788.165 kb on + strand, within ygaF at 2788.227 kb on - strand, within ygaF at 2788.250 kb on + strand, within ygaF at 2788.269 kb on - strand, within ygaF at 2788.322 kb on - strand, within ygaF at 2788.324 kb on - strand, within ygaF at 2788.324 kb on - strand, within ygaF at 2788.349 kb on - strand, within ygaF at 2788.551 kb on + strand, within ygaF at 2788.551 kb on + strand, within ygaF at 2788.665 kb on - strand, within ygaF at 2788.753 kb on - strand, within ygaF at 2788.753 kb on - strand, within ygaF at 2788.861 kb on + strand, within ygaF at 2788.861 kb on + strand, within ygaF at 2788.931 kb on - strand, within ygaF at 2789.116 kb on - strand, within ygaF at 2789.211 kb on - strand at 2789.230 kb on + strand at 2789.230 kb on + strand at 2789.254 kb on - strand at 2789.254 kb on - strand at 2789.309 kb on - strand at 2789.344 kb on - strand at 2789.436 kb on + strand at 2789.699 kb on + strand, within gabD at 2789.739 kb on - strand, within gabD at 2789.739 kb on - strand, within gabD at 2789.765 kb on - strand, within gabD at 2789.952 kb on - strand, within gabD at 2790.018 kb on + strand, within gabD at 2790.018 kb on + strand, within gabD at 2790.034 kb on - strand, within gabD at 2790.099 kb on + strand, within gabD at 2790.099 kb on + strand, within gabD at 2790.123 kb on + strand, within gabD at 2790.123 kb on + strand, within gabD
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source D-Glucose 0.25mM remove 2,787,071 + +2.0 2,787,166 + b2659 b2659 0.16 -2.3 2,787,166 + b2659 b2659 0.16 -2.5 2,787,265 + b2659 b2659 0.26 +0.4 2,787,737 - b2659 b2659 0.75 +2.1 2,788,053 + +0.3 2,788,138 + ygaF b2660 0.11 +0.1 2,788,165 + ygaF b2660 0.13 +1.1 2,788,227 - ygaF b2660 0.18 -3.4 2,788,250 + ygaF b2660 0.19 +1.3 2,788,269 - ygaF b2660 0.21 +0.9 2,788,322 - ygaF b2660 0.25 +0.5 2,788,324 - ygaF b2660 0.25 +1.8 2,788,324 - ygaF b2660 0.25 -2.3 2,788,349 - ygaF b2660 0.27 -1.4 2,788,551 + ygaF b2660 0.43 -1.5 2,788,551 + ygaF b2660 0.43 -4.7 2,788,665 - ygaF b2660 0.52 +1.4 2,788,753 - ygaF b2660 0.59 +0.3 2,788,753 - ygaF b2660 0.59 +1.3 2,788,861 + ygaF b2660 0.68 +3.5 2,788,861 + ygaF b2660 0.68 +1.1 2,788,931 - ygaF b2660 0.73 +1.6 2,789,116 - ygaF b2660 0.88 +1.0 2,789,211 - +1.5 2,789,230 + +1.9 2,789,230 + +0.5 2,789,254 - -0.6 2,789,254 - -2.1 2,789,309 - +1.0 2,789,344 - -1.9 2,789,436 + -3.2 2,789,699 + gabD b2661 0.28 +0.1 2,789,739 - gabD b2661 0.31 -3.1 2,789,739 - gabD b2661 0.31 -2.2 2,789,765 - gabD b2661 0.32 +0.9 2,789,952 - gabD b2661 0.45 -3.1 2,790,018 + gabD b2661 0.50 +1.1 2,790,018 + gabD b2661 0.50 +0.9 2,790,034 - gabD b2661 0.51 -0.4 2,790,099 + gabD b2661 0.55 +0.2 2,790,099 + gabD b2661 0.55 +1.4 2,790,123 + gabD b2661 0.57 +0.9 2,790,123 + gabD b2661 0.57 +1.1
Or see this region's nucleotide sequence