Strain Fitness in Escherichia coli BW25113 around b2359
Experiment: carbon source D-Glucose 0.25mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | carbon source D-Glucose 0.25mM |
---|---|---|---|---|---|
remove | |||||
2,470,741 | - | yfdN | b2357 | 0.67 | +0.3 |
2,470,913 | - | +1.9 | |||
2,470,928 | + | -4.0 | |||
2,471,021 | - | oweS | b2358 | 0.17 | -0.2 |
2,471,021 | - | oweS | b2358 | 0.17 | -0.1 |
2,471,090 | + | oweS | b2358 | 0.27 | +0.7 |
2,471,133 | + | oweS | b2358 | 0.33 | +1.0 |
2,471,133 | + | oweS | b2358 | 0.33 | -3.1 |
2,471,201 | + | oweS | b2358 | 0.43 | -3.4 |
2,471,201 | + | oweS | b2358 | 0.43 | -2.7 |
2,471,263 | + | oweS | b2358 | 0.51 | -0.8 |
2,471,277 | - | oweS | b2358 | 0.53 | +2.2 |
2,471,277 | - | oweS | b2358 | 0.53 | +1.4 |
2,471,372 | + | oweS | b2358 | 0.67 | -1.2 |
2,471,372 | + | oweS | b2358 | 0.67 | -4.3 |
2,471,526 | + | oweS | b2358 | 0.88 | -2.9 |
2,471,539 | - | +1.0 | |||
2,471,605 | + | -2.9 | |||
2,471,605 | + | -2.6 | |||
2,471,765 | - | yfdP | b2359 | 0.38 | +2.1 |
2,471,783 | + | yfdP | b2359 | 0.43 | +2.4 |
2,471,835 | + | yfdP | b2359 | 0.58 | -0.2 |
2,471,841 | - | yfdP | b2359 | 0.59 | +0.8 |
2,471,906 | + | yfdP | b2359 | 0.77 | -5.1 |
2,471,906 | + | yfdP | b2359 | 0.77 | +0.5 |
2,471,909 | + | yfdP | b2359 | 0.78 | -3.5 |
2,471,909 | + | yfdP | b2359 | 0.78 | -2.1 |
2,471,913 | + | yfdP | b2359 | 0.79 | +0.3 |
2,471,936 | + | yfdP | b2359 | 0.85 | -0.8 |
2,471,936 | + | yfdP | b2359 | 0.85 | +2.0 |
2,471,945 | + | yfdP | b2359 | 0.88 | +1.0 |
2,471,945 | + | yfdP | b2359 | 0.88 | +1.5 |
2,471,970 | + | -3.4 | |||
2,471,970 | + | +0.9 | |||
2,472,031 | + | -2.8 | |||
2,472,074 | + | -0.7 | |||
2,472,223 | - | yfdQ | b2360 | 0.20 | +3.7 |
2,472,227 | + | yfdQ | b2360 | 0.21 | +2.6 |
2,472,228 | - | yfdQ | b2360 | 0.21 | -0.8 |
2,472,235 | + | yfdQ | b2360 | 0.22 | +2.6 |
2,472,235 | - | yfdQ | b2360 | 0.22 | +2.6 |
2,472,235 | - | yfdQ | b2360 | 0.22 | +2.6 |
2,472,258 | - | yfdQ | b2360 | 0.25 | +0.6 |
2,472,272 | - | yfdQ | b2360 | 0.26 | +0.7 |
2,472,287 | - | yfdQ | b2360 | 0.28 | +2.6 |
2,472,287 | - | yfdQ | b2360 | 0.28 | -0.8 |
2,472,297 | - | yfdQ | b2360 | 0.29 | +2.1 |
2,472,303 | - | yfdQ | b2360 | 0.30 | -0.4 |
2,472,309 | + | yfdQ | b2360 | 0.31 | +2.6 |
2,472,309 | + | yfdQ | b2360 | 0.31 | +2.6 |
2,472,317 | - | yfdQ | b2360 | 0.32 | +0.3 |
2,472,317 | - | yfdQ | b2360 | 0.32 | +0.6 |
2,472,336 | + | yfdQ | b2360 | 0.34 | +2.6 |
2,472,337 | + | yfdQ | b2360 | 0.34 | -0.2 |
2,472,337 | + | yfdQ | b2360 | 0.34 | +2.6 |
2,472,339 | - | yfdQ | b2360 | 0.35 | +0.3 |
2,472,340 | - | yfdQ | b2360 | 0.35 | -2.5 |
2,472,343 | + | yfdQ | b2360 | 0.35 | +2.6 |
2,472,343 | - | yfdQ | b2360 | 0.35 | +2.3 |
2,472,346 | + | yfdQ | b2360 | 0.35 | -2.3 |
2,472,346 | - | yfdQ | b2360 | 0.35 | +0.0 |
2,472,353 | - | yfdQ | b2360 | 0.36 | +1.6 |
2,472,362 | - | yfdQ | b2360 | 0.37 | +0.5 |
2,472,363 | - | yfdQ | b2360 | 0.37 | +0.1 |
2,472,367 | - | yfdQ | b2360 | 0.38 | +0.0 |
2,472,367 | - | yfdQ | b2360 | 0.38 | -2.1 |
2,472,404 | + | yfdQ | b2360 | 0.42 | -1.0 |
2,472,410 | - | yfdQ | b2360 | 0.43 | +2.2 |
2,472,410 | - | yfdQ | b2360 | 0.43 | +1.2 |
2,472,417 | - | yfdQ | b2360 | 0.44 | +4.6 |
2,472,417 | - | yfdQ | b2360 | 0.44 | -3.2 |
2,472,451 | - | yfdQ | b2360 | 0.48 | +1.9 |
2,472,490 | - | yfdQ | b2360 | 0.53 | -0.2 |
2,472,492 | - | yfdQ | b2360 | 0.53 | -1.5 |
2,472,511 | - | yfdQ | b2360 | 0.55 | -0.8 |
2,472,577 | - | yfdQ | b2360 | 0.63 | +1.0 |
2,472,577 | - | yfdQ | b2360 | 0.63 | +0.3 |
2,472,578 | - | yfdQ | b2360 | 0.64 | +2.6 |
2,472,591 | - | yfdQ | b2360 | 0.65 | +2.6 |
2,472,618 | + | yfdQ | b2360 | 0.68 | +2.5 |
2,472,618 | + | yfdQ | b2360 | 0.68 | +3.0 |
2,472,626 | - | yfdQ | b2360 | 0.69 | -0.4 |
2,472,626 | - | yfdQ | b2360 | 0.69 | -0.2 |
2,472,630 | + | yfdQ | b2360 | 0.70 | +1.3 |
2,472,679 | - | yfdQ | b2360 | 0.76 | +2.6 |
2,472,684 | + | yfdQ | b2360 | 0.76 | +2.1 |
2,472,684 | + | yfdQ | b2360 | 0.76 | -2.6 |
2,472,686 | + | yfdQ | b2360 | 0.77 | -3.3 |
2,472,686 | + | yfdQ | b2360 | 0.77 | -0.8 |
2,472,704 | - | yfdQ | b2360 | 0.79 | +1.0 |
2,472,731 | + | yfdQ | b2360 | 0.82 | -0.6 |
2,472,745 | + | yfdQ | b2360 | 0.84 | +1.0 |
2,472,745 | + | yfdQ | b2360 | 0.84 | -4.6 |
2,472,745 | + | yfdQ | b2360 | 0.84 | +0.6 |
2,472,745 | + | yfdQ | b2360 | 0.84 | -2.6 |
2,472,745 | + | yfdQ | b2360 | 0.84 | -3.8 |
2,472,745 | + | yfdQ | b2360 | 0.84 | -3.7 |
2,472,745 | + | yfdQ | b2360 | 0.84 | +0.8 |
2,472,745 | + | yfdQ | b2360 | 0.84 | +1.6 |
2,472,746 | + | yfdQ | b2360 | 0.84 | +1.9 |
2,472,750 | + | yfdQ | b2360 | 0.84 | +1.2 |
2,472,759 | - | yfdQ | b2360 | 0.85 | -1.1 |
2,472,763 | + | yfdQ | b2360 | 0.86 | -2.6 |
2,472,763 | + | yfdQ | b2360 | 0.86 | +1.3 |
2,472,768 | + | yfdQ | b2360 | 0.87 | -1.3 |
2,472,773 | + | yfdQ | b2360 | 0.87 | -1.4 |
2,472,783 | + | yfdQ | b2360 | 0.88 | -0.8 |
2,472,783 | + | yfdQ | b2360 | 0.88 | +1.8 |
2,472,896 | + | -1.6 | |||
2,472,896 | + | -3.0 | |||
2,472,906 | - | +0.0 | |||
2,472,943 | + | -0.2 | |||
2,472,943 | + | -1.5 | |||
2,472,946 | + | +2.6 | |||
2,472,946 | + | +0.6 | |||
2,472,951 | + | +3.9 | |||
2,472,951 | + | -1.8 | |||
2,472,952 | - | +0.2 | |||
2,472,954 | - | -2.6 | |||
2,472,954 | - | +0.6 | |||
2,472,958 | + | -2.0 | |||
2,472,958 | + | -2.2 | |||
2,472,958 | + | -2.9 | |||
2,472,962 | + | +0.3 | |||
2,472,974 | + | +1.7 | |||
2,472,974 | + | -1.2 | |||
2,472,977 | - | -3.3 | |||
2,472,979 | + | -2.1 | |||
2,472,979 | + | -0.2 | |||
2,472,979 | + | -2.7 | |||
2,472,979 | + | -0.6 | |||
2,472,979 | + | +1.1 | |||
2,472,979 | + | -1.7 | |||
2,472,984 | + | +2.6 | |||
2,472,984 | + | -0.7 | |||
2,472,985 | + | +2.6 | |||
2,472,986 | + | -1.2 | |||
2,472,987 | + | +3.1 | |||
2,472,987 | + | +0.3 | |||
2,472,987 | + | +0.0 |
Or see this region's nucleotide sequence