Strain Fitness in Escherichia coli BW25113 around b2359

Experiment: carbon source D-Glucose 0.25mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfdN and oweS overlap by 4 nucleotidesoweS and yfdP are separated by 18 nucleotidesyfdP and yfdQ are separated by 65 nucleotides b2357: yfdN - CPS-53 (KpLE1) prophage; predicted protein (NCBI), at 2,470,409 to 2,470,903 yfdN b2358: oweS - CPS-53 (KpLE1) prophage; predicted defective phage replication protein O (RefSeq), at 2,470,900 to 2,471,607 oweS b2359: yfdP - CPS-53 (KpLE1) prophage; predicted protein (RefSeq), at 2,471,626 to 2,471,988 yfdP b2360: yfdQ - CPS-53 (KpLE1) prophage; predicted protein (NCBI), at 2,472,054 to 2,472,878 yfdQ Position (kb) 2471 2472Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 2470.741 kb on - strand, within yfdNat 2470.913 kb on - strandat 2470.928 kb on + strandat 2471.021 kb on - strand, within oweSat 2471.021 kb on - strand, within oweSat 2471.090 kb on + strand, within oweSat 2471.133 kb on + strand, within oweSat 2471.133 kb on + strand, within oweSat 2471.201 kb on + strand, within oweSat 2471.201 kb on + strand, within oweSat 2471.263 kb on + strand, within oweSat 2471.277 kb on - strand, within oweSat 2471.277 kb on - strand, within oweSat 2471.372 kb on + strand, within oweSat 2471.372 kb on + strand, within oweSat 2471.526 kb on + strand, within oweSat 2471.539 kb on - strandat 2471.605 kb on + strandat 2471.605 kb on + strandat 2471.765 kb on - strand, within yfdPat 2471.783 kb on + strand, within yfdPat 2471.835 kb on + strand, within yfdPat 2471.841 kb on - strand, within yfdPat 2471.906 kb on + strand, within yfdPat 2471.906 kb on + strand, within yfdPat 2471.909 kb on + strand, within yfdPat 2471.909 kb on + strand, within yfdPat 2471.913 kb on + strand, within yfdPat 2471.936 kb on + strand, within yfdPat 2471.936 kb on + strand, within yfdPat 2471.945 kb on + strand, within yfdPat 2471.945 kb on + strand, within yfdPat 2471.970 kb on + strandat 2471.970 kb on + strandat 2472.031 kb on + strandat 2472.074 kb on + strandat 2472.223 kb on - strand, within yfdQat 2472.227 kb on + strand, within yfdQat 2472.228 kb on - strand, within yfdQat 2472.235 kb on + strand, within yfdQat 2472.235 kb on - strand, within yfdQat 2472.235 kb on - strand, within yfdQat 2472.258 kb on - strand, within yfdQat 2472.272 kb on - strand, within yfdQat 2472.287 kb on - strand, within yfdQat 2472.287 kb on - strand, within yfdQat 2472.297 kb on - strand, within yfdQat 2472.303 kb on - strand, within yfdQat 2472.309 kb on + strand, within yfdQat 2472.309 kb on + strand, within yfdQat 2472.317 kb on - strand, within yfdQat 2472.317 kb on - strand, within yfdQat 2472.336 kb on + strand, within yfdQat 2472.337 kb on + strand, within yfdQat 2472.337 kb on + strand, within yfdQat 2472.339 kb on - strand, within yfdQat 2472.340 kb on - strand, within yfdQat 2472.343 kb on + strand, within yfdQat 2472.343 kb on - strand, within yfdQat 2472.346 kb on + strand, within yfdQat 2472.346 kb on - strand, within yfdQat 2472.353 kb on - strand, within yfdQat 2472.362 kb on - strand, within yfdQat 2472.363 kb on - strand, within yfdQat 2472.367 kb on - strand, within yfdQat 2472.367 kb on - strand, within yfdQat 2472.404 kb on + strand, within yfdQat 2472.410 kb on - strand, within yfdQat 2472.410 kb on - strand, within yfdQat 2472.417 kb on - strand, within yfdQat 2472.417 kb on - strand, within yfdQat 2472.451 kb on - strand, within yfdQat 2472.490 kb on - strand, within yfdQat 2472.492 kb on - strand, within yfdQat 2472.511 kb on - strand, within yfdQat 2472.577 kb on - strand, within yfdQat 2472.577 kb on - strand, within yfdQat 2472.578 kb on - strand, within yfdQat 2472.591 kb on - strand, within yfdQat 2472.618 kb on + strand, within yfdQat 2472.618 kb on + strand, within yfdQat 2472.626 kb on - strand, within yfdQat 2472.626 kb on - strand, within yfdQat 2472.630 kb on + strand, within yfdQat 2472.679 kb on - strand, within yfdQat 2472.684 kb on + strand, within yfdQat 2472.684 kb on + strand, within yfdQat 2472.686 kb on + strand, within yfdQat 2472.686 kb on + strand, within yfdQat 2472.704 kb on - strand, within yfdQat 2472.731 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.745 kb on + strand, within yfdQat 2472.746 kb on + strand, within yfdQat 2472.750 kb on + strand, within yfdQat 2472.759 kb on - strand, within yfdQat 2472.763 kb on + strand, within yfdQat 2472.763 kb on + strand, within yfdQat 2472.768 kb on + strand, within yfdQat 2472.773 kb on + strand, within yfdQat 2472.783 kb on + strand, within yfdQat 2472.783 kb on + strand, within yfdQat 2472.896 kb on + strandat 2472.896 kb on + strandat 2472.906 kb on - strandat 2472.943 kb on + strandat 2472.943 kb on + strandat 2472.946 kb on + strandat 2472.946 kb on + strandat 2472.951 kb on + strandat 2472.951 kb on + strandat 2472.952 kb on - strandat 2472.954 kb on - strandat 2472.954 kb on - strandat 2472.958 kb on + strandat 2472.958 kb on + strandat 2472.958 kb on + strandat 2472.962 kb on + strandat 2472.974 kb on + strandat 2472.974 kb on + strandat 2472.977 kb on - strandat 2472.979 kb on + strandat 2472.979 kb on + strandat 2472.979 kb on + strandat 2472.979 kb on + strandat 2472.979 kb on + strandat 2472.979 kb on + strandat 2472.984 kb on + strandat 2472.984 kb on + strandat 2472.985 kb on + strandat 2472.986 kb on + strandat 2472.987 kb on + strandat 2472.987 kb on + strandat 2472.987 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 0.25mM
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2,470,741 - yfdN b2357 0.67 +0.3
2,470,913 - +1.9
2,470,928 + -4.0
2,471,021 - oweS b2358 0.17 -0.2
2,471,021 - oweS b2358 0.17 -0.1
2,471,090 + oweS b2358 0.27 +0.7
2,471,133 + oweS b2358 0.33 +1.0
2,471,133 + oweS b2358 0.33 -3.1
2,471,201 + oweS b2358 0.43 -3.4
2,471,201 + oweS b2358 0.43 -2.7
2,471,263 + oweS b2358 0.51 -0.8
2,471,277 - oweS b2358 0.53 +2.2
2,471,277 - oweS b2358 0.53 +1.4
2,471,372 + oweS b2358 0.67 -1.2
2,471,372 + oweS b2358 0.67 -4.3
2,471,526 + oweS b2358 0.88 -2.9
2,471,539 - +1.0
2,471,605 + -2.9
2,471,605 + -2.6
2,471,765 - yfdP b2359 0.38 +2.1
2,471,783 + yfdP b2359 0.43 +2.4
2,471,835 + yfdP b2359 0.58 -0.2
2,471,841 - yfdP b2359 0.59 +0.8
2,471,906 + yfdP b2359 0.77 -5.1
2,471,906 + yfdP b2359 0.77 +0.5
2,471,909 + yfdP b2359 0.78 -3.5
2,471,909 + yfdP b2359 0.78 -2.1
2,471,913 + yfdP b2359 0.79 +0.3
2,471,936 + yfdP b2359 0.85 -0.8
2,471,936 + yfdP b2359 0.85 +2.0
2,471,945 + yfdP b2359 0.88 +1.0
2,471,945 + yfdP b2359 0.88 +1.5
2,471,970 + -3.4
2,471,970 + +0.9
2,472,031 + -2.8
2,472,074 + -0.7
2,472,223 - yfdQ b2360 0.20 +3.7
2,472,227 + yfdQ b2360 0.21 +2.6
2,472,228 - yfdQ b2360 0.21 -0.8
2,472,235 + yfdQ b2360 0.22 +2.6
2,472,235 - yfdQ b2360 0.22 +2.6
2,472,235 - yfdQ b2360 0.22 +2.6
2,472,258 - yfdQ b2360 0.25 +0.6
2,472,272 - yfdQ b2360 0.26 +0.7
2,472,287 - yfdQ b2360 0.28 +2.6
2,472,287 - yfdQ b2360 0.28 -0.8
2,472,297 - yfdQ b2360 0.29 +2.1
2,472,303 - yfdQ b2360 0.30 -0.4
2,472,309 + yfdQ b2360 0.31 +2.6
2,472,309 + yfdQ b2360 0.31 +2.6
2,472,317 - yfdQ b2360 0.32 +0.3
2,472,317 - yfdQ b2360 0.32 +0.6
2,472,336 + yfdQ b2360 0.34 +2.6
2,472,337 + yfdQ b2360 0.34 -0.2
2,472,337 + yfdQ b2360 0.34 +2.6
2,472,339 - yfdQ b2360 0.35 +0.3
2,472,340 - yfdQ b2360 0.35 -2.5
2,472,343 + yfdQ b2360 0.35 +2.6
2,472,343 - yfdQ b2360 0.35 +2.3
2,472,346 + yfdQ b2360 0.35 -2.3
2,472,346 - yfdQ b2360 0.35 +0.0
2,472,353 - yfdQ b2360 0.36 +1.6
2,472,362 - yfdQ b2360 0.37 +0.5
2,472,363 - yfdQ b2360 0.37 +0.1
2,472,367 - yfdQ b2360 0.38 +0.0
2,472,367 - yfdQ b2360 0.38 -2.1
2,472,404 + yfdQ b2360 0.42 -1.0
2,472,410 - yfdQ b2360 0.43 +2.2
2,472,410 - yfdQ b2360 0.43 +1.2
2,472,417 - yfdQ b2360 0.44 +4.6
2,472,417 - yfdQ b2360 0.44 -3.2
2,472,451 - yfdQ b2360 0.48 +1.9
2,472,490 - yfdQ b2360 0.53 -0.2
2,472,492 - yfdQ b2360 0.53 -1.5
2,472,511 - yfdQ b2360 0.55 -0.8
2,472,577 - yfdQ b2360 0.63 +1.0
2,472,577 - yfdQ b2360 0.63 +0.3
2,472,578 - yfdQ b2360 0.64 +2.6
2,472,591 - yfdQ b2360 0.65 +2.6
2,472,618 + yfdQ b2360 0.68 +2.5
2,472,618 + yfdQ b2360 0.68 +3.0
2,472,626 - yfdQ b2360 0.69 -0.4
2,472,626 - yfdQ b2360 0.69 -0.2
2,472,630 + yfdQ b2360 0.70 +1.3
2,472,679 - yfdQ b2360 0.76 +2.6
2,472,684 + yfdQ b2360 0.76 +2.1
2,472,684 + yfdQ b2360 0.76 -2.6
2,472,686 + yfdQ b2360 0.77 -3.3
2,472,686 + yfdQ b2360 0.77 -0.8
2,472,704 - yfdQ b2360 0.79 +1.0
2,472,731 + yfdQ b2360 0.82 -0.6
2,472,745 + yfdQ b2360 0.84 +1.0
2,472,745 + yfdQ b2360 0.84 -4.6
2,472,745 + yfdQ b2360 0.84 +0.6
2,472,745 + yfdQ b2360 0.84 -2.6
2,472,745 + yfdQ b2360 0.84 -3.8
2,472,745 + yfdQ b2360 0.84 -3.7
2,472,745 + yfdQ b2360 0.84 +0.8
2,472,745 + yfdQ b2360 0.84 +1.6
2,472,746 + yfdQ b2360 0.84 +1.9
2,472,750 + yfdQ b2360 0.84 +1.2
2,472,759 - yfdQ b2360 0.85 -1.1
2,472,763 + yfdQ b2360 0.86 -2.6
2,472,763 + yfdQ b2360 0.86 +1.3
2,472,768 + yfdQ b2360 0.87 -1.3
2,472,773 + yfdQ b2360 0.87 -1.4
2,472,783 + yfdQ b2360 0.88 -0.8
2,472,783 + yfdQ b2360 0.88 +1.8
2,472,896 + -1.6
2,472,896 + -3.0
2,472,906 - +0.0
2,472,943 + -0.2
2,472,943 + -1.5
2,472,946 + +2.6
2,472,946 + +0.6
2,472,951 + +3.9
2,472,951 + -1.8
2,472,952 - +0.2
2,472,954 - -2.6
2,472,954 - +0.6
2,472,958 + -2.0
2,472,958 + -2.2
2,472,958 + -2.9
2,472,962 + +0.3
2,472,974 + +1.7
2,472,974 + -1.2
2,472,977 - -3.3
2,472,979 + -2.1
2,472,979 + -0.2
2,472,979 + -2.7
2,472,979 + -0.6
2,472,979 + +1.1
2,472,979 + -1.7
2,472,984 + +2.6
2,472,984 + -0.7
2,472,985 + +2.6
2,472,986 + -1.2
2,472,987 + +3.1
2,472,987 + +0.3
2,472,987 + +0.0

Or see this region's nucleotide sequence