Strain Fitness in Escherichia coli BW25113 around b4641

Experiment: carbon source D-Glucose 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinsH-6 and yoeG are separated by 38 nucleotidesyoeG and yoeH are separated by 368 nucleotidesyoeH and yoeA are separated by 215 nucleotidesyoeA and insD-3 are separated by 13 nucleotides b1994: insH-6 - CP4-44 prophage; IS5 transposase and trans-activator (NCBI), at 2,064,329 to 2,065,345 insH-6 b4640: yoeG - no description, at 2,065,384 to 2,065,916 yoeG b4641: yoeH - no description, at 2,066,285 to 2,066,443 yoeH b4582: yoeA - no description, at 2,066,659 to 2,066,962 yoeA b1996: insD-3 - CP4-44 prophage; IS2 insertion element transposase InsAB' (NCBI), at 2,066,976 to 2,067,881 insD-3 Position (kb) 2066 2067Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2065.375 kb on + strandat 2065.413 kb on - strandat 2065.421 kb on + strandat 2065.483 kb on - strand, within yoeGat 2065.512 kb on + strand, within yoeGat 2065.543 kb on + strand, within yoeGat 2065.543 kb on + strand, within yoeGat 2065.551 kb on - strand, within yoeGat 2065.551 kb on - strand, within yoeGat 2065.560 kb on + strand, within yoeGat 2065.601 kb on + strand, within yoeGat 2065.611 kb on - strand, within yoeGat 2065.611 kb on - strand, within yoeGat 2065.612 kb on + strand, within yoeGat 2065.653 kb on + strand, within yoeGat 2065.661 kb on - strand, within yoeGat 2065.664 kb on + strand, within yoeGat 2065.666 kb on - strand, within yoeGat 2065.712 kb on - strand, within yoeGat 2065.782 kb on + strand, within yoeGat 2065.858 kb on - strand, within yoeGat 2065.858 kb on - strand, within yoeGat 2065.858 kb on - strand, within yoeGat 2065.891 kb on - strandat 2065.920 kb on + strandat 2065.925 kb on - strandat 2065.925 kb on - strandat 2065.979 kb on - strandat 2066.049 kb on - strandat 2066.102 kb on - strandat 2066.119 kb on - strandat 2066.119 kb on - strandat 2066.129 kb on - strandat 2066.129 kb on - strandat 2066.133 kb on - strandat 2066.134 kb on - strandat 2066.134 kb on - strandat 2066.134 kb on - strandat 2066.138 kb on - strandat 2066.196 kb on - strandat 2066.202 kb on - strandat 2066.202 kb on - strandat 2066.204 kb on + strandat 2066.207 kb on - strandat 2066.207 kb on - strandat 2066.210 kb on + strandat 2066.210 kb on + strandat 2066.220 kb on + strandat 2066.229 kb on - strandat 2066.229 kb on - strandat 2066.289 kb on + strandat 2066.295 kb on - strandat 2066.297 kb on - strandat 2066.297 kb on - strandat 2066.301 kb on + strand, within yoeHat 2066.302 kb on - strand, within yoeHat 2066.302 kb on - strand, within yoeHat 2066.303 kb on - strand, within yoeHat 2066.303 kb on - strand, within yoeHat 2066.309 kb on - strand, within yoeHat 2066.309 kb on - strand, within yoeHat 2066.309 kb on - strand, within yoeHat 2066.309 kb on - strand, within yoeHat 2066.341 kb on - strand, within yoeHat 2066.341 kb on - strand, within yoeHat 2066.351 kb on - strand, within yoeHat 2066.379 kb on - strand, within yoeHat 2066.389 kb on - strand, within yoeHat 2066.426 kb on - strand, within yoeHat 2066.434 kb on - strandat 2066.460 kb on - strandat 2066.460 kb on - strandat 2066.464 kb on - strandat 2066.464 kb on - strandat 2066.468 kb on + strandat 2066.468 kb on + strandat 2066.478 kb on + strandat 2066.483 kb on + strandat 2066.506 kb on - strandat 2066.506 kb on - strandat 2066.654 kb on + strandat 2066.654 kb on + strandat 2066.675 kb on - strandat 2066.787 kb on - strand, within yoeAat 2066.841 kb on - strand, within yoeAat 2066.921 kb on - strand, within yoeAat 2066.925 kb on - strand, within yoeAat 2066.925 kb on - strand, within yoeAat 2067.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 0.5mM
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2,065,375 + +0.2
2,065,413 - -2.2
2,065,421 + +0.5
2,065,483 - yoeG b4640 0.19 -1.4
2,065,512 + yoeG b4640 0.24 -1.4
2,065,543 + yoeG b4640 0.30 -2.9
2,065,543 + yoeG b4640 0.30 -0.8
2,065,551 - yoeG b4640 0.31 +0.5
2,065,551 - yoeG b4640 0.31 -1.5
2,065,560 + yoeG b4640 0.33 -3.1
2,065,601 + yoeG b4640 0.41 +1.6
2,065,611 - yoeG b4640 0.43 +1.8
2,065,611 - yoeG b4640 0.43 -1.4
2,065,612 + yoeG b4640 0.43 -2.2
2,065,653 + yoeG b4640 0.50 -1.0
2,065,661 - yoeG b4640 0.52 +0.2
2,065,664 + yoeG b4640 0.53 +1.8
2,065,666 - yoeG b4640 0.53 +1.8
2,065,712 - yoeG b4640 0.62 +1.8
2,065,782 + yoeG b4640 0.75 -2.2
2,065,858 - yoeG b4640 0.89 -2.1
2,065,858 - yoeG b4640 0.89 -2.3
2,065,858 - yoeG b4640 0.89 +1.8
2,065,891 - +1.8
2,065,920 + -1.0
2,065,925 - -0.2
2,065,925 - +3.4
2,065,979 - -1.5
2,066,049 - -2.4
2,066,102 - +1.0
2,066,119 - -0.8
2,066,119 - +0.4
2,066,129 - -1.2
2,066,129 - +0.4
2,066,133 - -2.1
2,066,134 - +0.4
2,066,134 - -2.2
2,066,134 - -0.1
2,066,138 - -1.0
2,066,196 - -0.4
2,066,202 - -1.8
2,066,202 - -0.4
2,066,204 + -1.7
2,066,207 - +0.5
2,066,207 - +0.7
2,066,210 + -2.2
2,066,210 + +0.8
2,066,220 + +1.8
2,066,229 - +0.5
2,066,229 - +1.8
2,066,289 + +0.8
2,066,295 - +0.0
2,066,297 - +1.4
2,066,297 - +0.1
2,066,301 + yoeH b4641 0.10 +0.8
2,066,302 - yoeH b4641 0.11 +1.1
2,066,302 - yoeH b4641 0.11 +2.4
2,066,303 - yoeH b4641 0.11 +1.0
2,066,303 - yoeH b4641 0.11 -1.0
2,066,309 - yoeH b4641 0.15 +1.3
2,066,309 - yoeH b4641 0.15 +2.8
2,066,309 - yoeH b4641 0.15 +0.5
2,066,309 - yoeH b4641 0.15 +1.4
2,066,341 - yoeH b4641 0.35 -0.7
2,066,341 - yoeH b4641 0.35 -0.4
2,066,351 - yoeH b4641 0.42 +1.0
2,066,379 - yoeH b4641 0.59 -0.2
2,066,389 - yoeH b4641 0.65 -0.1
2,066,426 - yoeH b4641 0.89 +0.9
2,066,434 - +0.1
2,066,460 - +0.1
2,066,460 - -0.6
2,066,464 - -0.2
2,066,464 - +0.2
2,066,468 + +1.8
2,066,468 + +1.3
2,066,478 + -0.6
2,066,483 + +4.4
2,066,506 - +1.6
2,066,506 - -0.4
2,066,654 + +2.4
2,066,654 + +1.0
2,066,675 - -1.1
2,066,787 - yoeA b4582 0.42 +1.3
2,066,841 - yoeA b4582 0.60 +1.0
2,066,921 - yoeA b4582 0.86 -0.5
2,066,925 - yoeA b4582 0.88 -0.6
2,066,925 - yoeA b4582 0.88 +0.4
2,067,013 - +0.5

Or see this region's nucleotide sequence