Experiment: carbon source D-Glucose 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfjR and ypjK are separated by 40 nucleotides ypjK and b2636 overlap by 1 nucleotides b2636 and yfjT are separated by 23 nucleotides yfjT and yfjU are separated by 386 nucleotides yfjU and yfjV are separated by 12 nucleotides
b2634: yfjR - CP4-57 prophage; predicted DNA-binding transcriptional regulator (NCBI), at 2,767,725 to 2,768,426
yfjR
b2635: ypjK - CP4-57 prophage; predicted inner membrane protein (NCBI), at 2,768,467 to 2,768,703
ypjK
b2636: b2636 - orf, hypothetical protein (VIMSS), at 2,768,703 to 2,769,146
b2636
b2637: yfjT - CP4-57 prophage; predicted protein (NCBI), at 2,769,170 to 2,769,637
yfjT
b2638: yfjU - CP4-57 prophage; conserved protein (RefSeq), at 2,770,024 to 2,770,176
yfjU
b2641: yfjV - orf, hypothetical protein (VIMSS), at 2,770,189 to 2,771,204
yfjV
Position (kb)
2769
2770 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2768.215 kb on + strand, within yfjR at 2768.258 kb on - strand, within yfjR at 2768.258 kb on - strand, within yfjR at 2768.388 kb on - strand at 2768.429 kb on - strand at 2768.429 kb on - strand at 2768.437 kb on + strand at 2768.445 kb on - strand at 2768.460 kb on - strand at 2768.470 kb on - strand at 2768.582 kb on - strand, within ypjK at 2768.582 kb on - strand, within ypjK at 2768.582 kb on - strand, within ypjK at 2768.791 kb on - strand, within b2636 at 2768.810 kb on + strand, within b2636 at 2768.843 kb on - strand, within b2636 at 2768.845 kb on - strand, within b2636 at 2768.919 kb on - strand, within b2636 at 2768.941 kb on - strand, within b2636 at 2768.941 kb on - strand, within b2636 at 2769.051 kb on - strand, within b2636 at 2769.064 kb on - strand, within b2636 at 2769.064 kb on - strand, within b2636 at 2769.099 kb on + strand, within b2636 at 2769.099 kb on + strand, within b2636 at 2769.118 kb on - strand at 2769.242 kb on - strand, within yfjT at 2769.288 kb on - strand, within yfjT at 2769.528 kb on - strand, within yfjT at 2769.528 kb on - strand, within yfjT at 2769.650 kb on + strand at 2769.650 kb on + strand at 2769.658 kb on + strand at 2769.737 kb on - strand at 2769.737 kb on - strand at 2769.822 kb on - strand at 2769.822 kb on - strand at 2769.945 kb on - strand at 2770.051 kb on + strand, within yfjU at 2770.051 kb on + strand, within yfjU at 2770.070 kb on - strand, within yfjU at 2770.124 kb on - strand, within yfjU at 2770.124 kb on - strand, within yfjU at 2770.127 kb on - strand, within yfjU at 2770.176 kb on + strand at 2770.194 kb on + strand at 2770.194 kb on + strand at 2770.239 kb on + strand at 2770.247 kb on - strand at 2770.357 kb on + strand, within yfjV at 2770.357 kb on + strand, within yfjV at 2770.422 kb on + strand, within yfjV at 2770.433 kb on + strand, within yfjV at 2770.433 kb on + strand, within yfjV at 2770.570 kb on + strand, within yfjV at 2770.570 kb on + strand, within yfjV at 2770.594 kb on + strand, within yfjV at 2770.594 kb on + strand, within yfjV at 2770.602 kb on - strand, within yfjV at 2770.609 kb on + strand, within yfjV at 2770.609 kb on + strand, within yfjV
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source D-Glucose 0.5mM remove 2,768,215 + yfjR b2634 0.70 -1.0 2,768,258 - yfjR b2634 0.76 +0.7 2,768,258 - yfjR b2634 0.76 -0.3 2,768,388 - +0.3 2,768,429 - +0.3 2,768,429 - +0.8 2,768,437 + -1.1 2,768,445 - +0.1 2,768,460 - -1.1 2,768,470 - -0.2 2,768,582 - ypjK b2635 0.49 +0.2 2,768,582 - ypjK b2635 0.49 +1.2 2,768,582 - ypjK b2635 0.49 +1.5 2,768,791 - b2636 b2636 0.20 +0.2 2,768,810 + b2636 b2636 0.24 -0.0 2,768,843 - b2636 b2636 0.32 +0.1 2,768,845 - b2636 b2636 0.32 +0.4 2,768,919 - b2636 b2636 0.49 -3.4 2,768,941 - b2636 b2636 0.54 +1.7 2,768,941 - b2636 b2636 0.54 +0.3 2,769,051 - b2636 b2636 0.78 +0.2 2,769,064 - b2636 b2636 0.81 -0.8 2,769,064 - b2636 b2636 0.81 +1.1 2,769,099 + b2636 b2636 0.89 +0.2 2,769,099 + b2636 b2636 0.89 +0.5 2,769,118 - -0.9 2,769,242 - yfjT b2637 0.15 +1.0 2,769,288 - yfjT b2637 0.25 -0.2 2,769,528 - yfjT b2637 0.76 +1.4 2,769,528 - yfjT b2637 0.76 -0.1 2,769,650 + +0.3 2,769,650 + +0.1 2,769,658 + +0.1 2,769,737 - +1.2 2,769,737 - +0.0 2,769,822 - +0.9 2,769,822 - +0.2 2,769,945 - +0.1 2,770,051 + yfjU b2638 0.18 -1.6 2,770,051 + yfjU b2638 0.18 -0.9 2,770,070 - yfjU b2638 0.30 +0.5 2,770,124 - yfjU b2638 0.65 +0.1 2,770,124 - yfjU b2638 0.65 +0.3 2,770,127 - yfjU b2638 0.67 +0.2 2,770,176 + -0.2 2,770,194 + +0.3 2,770,194 + +0.8 2,770,239 + -0.2 2,770,247 - +0.5 2,770,357 + yfjV b2641 0.17 +0.5 2,770,357 + yfjV b2641 0.17 -0.1 2,770,422 + yfjV b2641 0.23 -0.0 2,770,433 + yfjV b2641 0.24 +0.7 2,770,433 + yfjV b2641 0.24 -0.3 2,770,570 + yfjV b2641 0.38 -0.2 2,770,570 + yfjV b2641 0.38 +0.2 2,770,594 + yfjV b2641 0.40 +0.7 2,770,594 + yfjV b2641 0.40 +1.4 2,770,602 - yfjV b2641 0.41 -0.2 2,770,609 + yfjV b2641 0.41 -0.8 2,770,609 + yfjV b2641 0.41 +0.5
Or see this region's nucleotide sequence