Strain Fitness in Escherichia coli BW25113 around b2437

Experiment: carbon source D-Glucose 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntamiA and hemF are separated by 3 nucleotideshemF and yfeG are separated by 5 nucleotidesyfeG and b2438 are separated by 45 nucleotidesb2438 and eutL are separated by 12 nucleotides b2435: amiA - N-acetylmuramoyl-l-alanine amidase I (NCBI), at 2,550,374 to 2,551,243 amiA b2436: hemF - coproporphyrinogen III oxidase (NCBI), at 2,551,247 to 2,552,146 hemF b2437: yfeG - predicted DNA-binding transcriptional regulator (NCBI), at 2,552,152 to 2,553,204 yfeG b2438: b2438 - orf, hypothetical protein (VIMSS), at 2,553,250 to 2,553,750 b2438 b2439: eutL - predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI), at 2,553,763 to 2,554,422 eutL Position (kb) 2552 2553 2554Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2551.197 kb on + strandat 2551.266 kb on + strandat 2551.295 kb on - strandat 2551.295 kb on - strandat 2551.355 kb on - strand, within hemFat 2551.444 kb on + strand, within hemFat 2551.444 kb on + strand, within hemFat 2551.531 kb on - strand, within hemFat 2551.643 kb on - strand, within hemFat 2551.645 kb on + strand, within hemFat 2551.678 kb on + strand, within hemFat 2551.678 kb on + strand, within hemFat 2551.837 kb on + strand, within hemFat 2551.837 kb on + strand, within hemFat 2552.065 kb on - strandat 2552.065 kb on - strandat 2552.087 kb on + strandat 2552.087 kb on + strandat 2552.141 kb on + strandat 2552.262 kb on - strand, within yfeGat 2552.262 kb on - strand, within yfeGat 2552.460 kb on + strand, within yfeGat 2552.460 kb on + strand, within yfeGat 2552.659 kb on - strand, within yfeGat 2552.659 kb on - strand, within yfeGat 2552.719 kb on - strand, within yfeGat 2552.790 kb on - strand, within yfeGat 2552.790 kb on - strand, within yfeGat 2552.812 kb on - strand, within yfeGat 2552.812 kb on - strand, within yfeGat 2552.881 kb on + strand, within yfeGat 2552.881 kb on + strand, within yfeGat 2552.917 kb on + strand, within yfeGat 2552.917 kb on + strand, within yfeGat 2552.932 kb on + strand, within yfeGat 2552.992 kb on - strand, within yfeGat 2553.227 kb on + strandat 2553.256 kb on - strandat 2553.292 kb on + strandat 2553.469 kb on - strand, within b2438at 2553.469 kb on - strand, within b2438at 2553.477 kb on + strand, within b2438at 2553.478 kb on + strand, within b2438at 2553.478 kb on + strand, within b2438at 2553.478 kb on + strand, within b2438at 2553.478 kb on + strand, within b2438at 2553.513 kb on - strand, within b2438at 2553.554 kb on - strand, within b2438at 2553.598 kb on - strand, within b2438at 2553.732 kb on + strandat 2553.922 kb on + strand, within eutLat 2554.133 kb on - strand, within eutLat 2554.133 kb on - strand, within eutL

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 0.5mM
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2,551,197 + +0.0
2,551,266 + -0.8
2,551,295 - -0.0
2,551,295 - +0.1
2,551,355 - hemF b2436 0.12 +2.0
2,551,444 + hemF b2436 0.22 -1.1
2,551,444 + hemF b2436 0.22 +0.1
2,551,531 - hemF b2436 0.32 -0.3
2,551,643 - hemF b2436 0.44 +0.5
2,551,645 + hemF b2436 0.44 +1.0
2,551,678 + hemF b2436 0.48 -0.2
2,551,678 + hemF b2436 0.48 +0.7
2,551,837 + hemF b2436 0.66 -2.8
2,551,837 + hemF b2436 0.66 -0.8
2,552,065 - -0.8
2,552,065 - -1.5
2,552,087 + -0.0
2,552,087 + -0.0
2,552,141 + +0.1
2,552,262 - yfeG b2437 0.10 +0.5
2,552,262 - yfeG b2437 0.10 +0.7
2,552,460 + yfeG b2437 0.29 +0.6
2,552,460 + yfeG b2437 0.29 +0.6
2,552,659 - yfeG b2437 0.48 +1.3
2,552,659 - yfeG b2437 0.48 -3.2
2,552,719 - yfeG b2437 0.54 +0.9
2,552,790 - yfeG b2437 0.61 +1.4
2,552,790 - yfeG b2437 0.61 +0.4
2,552,812 - yfeG b2437 0.63 +0.1
2,552,812 - yfeG b2437 0.63 +0.4
2,552,881 + yfeG b2437 0.69 +1.7
2,552,881 + yfeG b2437 0.69 +0.8
2,552,917 + yfeG b2437 0.73 -0.2
2,552,917 + yfeG b2437 0.73 +0.4
2,552,932 + yfeG b2437 0.74 +0.9
2,552,992 - yfeG b2437 0.80 +0.7
2,553,227 + -0.3
2,553,256 - +0.1
2,553,292 + +0.1
2,553,469 - b2438 b2438 0.44 +0.3
2,553,469 - b2438 b2438 0.44 -1.3
2,553,477 + b2438 b2438 0.45 +0.0
2,553,478 + b2438 b2438 0.46 -0.3
2,553,478 + b2438 b2438 0.46 -0.9
2,553,478 + b2438 b2438 0.46 +0.4
2,553,478 + b2438 b2438 0.46 +0.1
2,553,513 - b2438 b2438 0.52 +0.3
2,553,554 - b2438 b2438 0.61 +0.4
2,553,598 - b2438 b2438 0.69 -0.2
2,553,732 + +0.4
2,553,922 + eutL b2439 0.24 -0.6
2,554,133 - eutL b2439 0.56 +0.5
2,554,133 - eutL b2439 0.56 -0.5

Or see this region's nucleotide sequence