Strain Fitness in Escherichia coli BW25113 around b2064

Experiment: carbon source D-Glucose 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyegH and asmA are separated by 273 nucleotidesasmA and dcd are separated by 21 nucleotidesdcd and udk are separated by 91 nucleotides b2063: yegH - putative transport protein (VIMSS), at 2,135,926 to 2,137,509 yegH b2064: asmA - predicted assembly protein (NCBI), at 2,137,783 to 2,139,636 asmA b2065: dcd - deoxycytidine triphosphate deaminase (NCBI), at 2,139,658 to 2,140,239 dcd b2066: udk - uridine/cytidine kinase (VIMSS), at 2,140,331 to 2,140,972 udk Position (kb) 2137 2138 2139 2140Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2136.836 kb on + strand, within yegHat 2136.865 kb on - strand, within yegHat 2136.940 kb on + strand, within yegHat 2137.000 kb on - strand, within yegHat 2137.000 kb on - strand, within yegHat 2137.023 kb on - strand, within yegHat 2137.147 kb on + strand, within yegHat 2137.264 kb on - strand, within yegHat 2137.290 kb on - strand, within yegHat 2137.305 kb on - strand, within yegHat 2137.305 kb on - strand, within yegHat 2137.355 kb on + strandat 2137.368 kb on + strandat 2137.451 kb on - strandat 2137.471 kb on - strandat 2137.617 kb on - strandat 2137.618 kb on + strandat 2137.618 kb on + strandat 2137.653 kb on - strandat 2137.688 kb on + strandat 2137.764 kb on + strandat 2137.767 kb on - strandat 2137.789 kb on - strandat 2137.844 kb on + strandat 2137.881 kb on - strandat 2137.881 kb on - strandat 2137.934 kb on - strandat 2137.934 kb on - strandat 2137.937 kb on + strandat 2137.944 kb on - strandat 2137.953 kb on + strandat 2137.953 kb on + strandat 2138.077 kb on - strand, within asmAat 2138.115 kb on - strand, within asmAat 2138.212 kb on + strand, within asmAat 2138.230 kb on - strand, within asmAat 2138.243 kb on - strand, within asmAat 2138.328 kb on - strand, within asmAat 2138.328 kb on - strand, within asmAat 2138.347 kb on - strand, within asmAat 2138.402 kb on - strand, within asmAat 2138.402 kb on - strand, within asmAat 2138.511 kb on - strand, within asmAat 2138.594 kb on - strand, within asmAat 2138.599 kb on - strand, within asmAat 2138.599 kb on - strand, within asmAat 2138.758 kb on - strand, within asmAat 2138.820 kb on + strand, within asmAat 2138.829 kb on + strand, within asmAat 2138.849 kb on - strand, within asmAat 2138.959 kb on - strand, within asmAat 2139.025 kb on + strand, within asmAat 2139.052 kb on + strand, within asmAat 2139.108 kb on - strand, within asmAat 2139.191 kb on - strand, within asmAat 2139.272 kb on - strand, within asmAat 2139.299 kb on + strand, within asmAat 2139.366 kb on - strand, within asmAat 2139.390 kb on - strand, within asmAat 2139.416 kb on - strand, within asmAat 2139.457 kb on - strandat 2139.457 kb on - strandat 2139.516 kb on - strandat 2139.521 kb on - strandat 2139.521 kb on - strandat 2139.530 kb on + strandat 2139.574 kb on + strandat 2139.574 kb on + strandat 2139.640 kb on + strandat 2140.303 kb on + strandat 2140.303 kb on + strandat 2140.303 kb on + strandat 2140.311 kb on - strandat 2140.363 kb on + strandat 2140.494 kb on - strandat 2140.494 kb on - strand, within udkat 2140.505 kb on + strand, within udk

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 0.5mM
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2,136,836 + yegH b2063 0.57 -0.6
2,136,865 - yegH b2063 0.59 +0.1
2,136,940 + yegH b2063 0.64 -0.4
2,137,000 - yegH b2063 0.68 -1.1
2,137,000 - yegH b2063 0.68 -0.2
2,137,023 - yegH b2063 0.69 -1.1
2,137,147 + yegH b2063 0.77 -0.1
2,137,264 - yegH b2063 0.84 -0.2
2,137,290 - yegH b2063 0.86 -0.2
2,137,305 - yegH b2063 0.87 -0.6
2,137,305 - yegH b2063 0.87 +0.2
2,137,355 + -0.5
2,137,368 + +0.1
2,137,451 - +0.5
2,137,471 - +0.3
2,137,617 - +0.9
2,137,618 + +0.1
2,137,618 + -0.8
2,137,653 - -0.4
2,137,688 + +0.2
2,137,764 + +0.5
2,137,767 - +0.8
2,137,789 - +0.6
2,137,844 + +0.4
2,137,881 - +0.8
2,137,881 - -3.1
2,137,934 - +1.7
2,137,934 - -1.9
2,137,937 + +0.2
2,137,944 - -0.1
2,137,953 + +0.6
2,137,953 + +0.8
2,138,077 - asmA b2064 0.16 -0.0
2,138,115 - asmA b2064 0.18 -0.6
2,138,212 + asmA b2064 0.23 -0.8
2,138,230 - asmA b2064 0.24 +0.1
2,138,243 - asmA b2064 0.25 -0.8
2,138,328 - asmA b2064 0.29 -1.3
2,138,328 - asmA b2064 0.29 +1.3
2,138,347 - asmA b2064 0.30 +1.0
2,138,402 - asmA b2064 0.33 +1.7
2,138,402 - asmA b2064 0.33 +2.4
2,138,511 - asmA b2064 0.39 +0.9
2,138,594 - asmA b2064 0.44 +1.4
2,138,599 - asmA b2064 0.44 +0.3
2,138,599 - asmA b2064 0.44 -0.7
2,138,758 - asmA b2064 0.53 +0.2
2,138,820 + asmA b2064 0.56 +0.7
2,138,829 + asmA b2064 0.56 +1.1
2,138,849 - asmA b2064 0.57 +1.0
2,138,959 - asmA b2064 0.63 +1.4
2,139,025 + asmA b2064 0.67 +1.6
2,139,052 + asmA b2064 0.68 +0.1
2,139,108 - asmA b2064 0.71 +0.1
2,139,191 - asmA b2064 0.76 +1.0
2,139,272 - asmA b2064 0.80 +0.2
2,139,299 + asmA b2064 0.82 +1.6
2,139,366 - asmA b2064 0.85 +0.8
2,139,390 - asmA b2064 0.87 +0.2
2,139,416 - asmA b2064 0.88 +1.0
2,139,457 - +2.1
2,139,457 - +0.2
2,139,516 - +0.5
2,139,521 - +2.1
2,139,521 - +0.1
2,139,530 + -0.3
2,139,574 + -0.0
2,139,574 + +0.1
2,139,640 + -1.2
2,140,303 + +0.0
2,140,303 + +1.4
2,140,303 + -0.9
2,140,311 - -0.6
2,140,363 + +0.7
2,140,494 - +0.4
2,140,494 - udk b2066 0.25 +0.8
2,140,505 + udk b2066 0.27 +0.2

Or see this region's nucleotide sequence