Strain Fitness in Escherichia coli BW25113 around b1668

Experiment: carbon source D-Glucose 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntvalV and valW are separated by 4 nucleotidesvalW and ydhR are separated by 107 nucleotidesydhR and ydhS are separated by 125 nucleotidesydhS and ydhT are separated by 11 nucleotidesydhT and ydhU are separated by 3 nucleotides b1665: valV - tRNA-Val (NCBI), at 1,744,459 to 1,744,535 valV b1666: valW - tRNA-Val (NCBI), at 1,744,540 to 1,744,616 valW b1667: ydhR - hypothetical protein (NCBI), at 1,744,724 to 1,745,029 ydhR b1668: ydhS - conserved protein with FAD/NAD(P)-binding domain (NCBI), at 1,745,155 to 1,746,759 ydhS b1669: ydhT - hypothetical protein (NCBI), at 1,746,771 to 1,747,583 ydhT b1670: ydhU - predicted cytochrome (NCBI), at 1,747,587 to 1,748,372 ydhU Position (kb) 1745 1746 1747Strain fitness (log2 ratio) -2 -1 0 1 2at 1744.176 kb on - strandat 1744.194 kb on - strandat 1744.570 kb on + strand, within valWat 1744.671 kb on - strandat 1744.797 kb on - strand, within ydhRat 1744.953 kb on + strand, within ydhRat 1745.178 kb on - strandat 1745.178 kb on - strandat 1745.272 kb on + strandat 1745.288 kb on + strandat 1745.349 kb on + strand, within ydhSat 1745.351 kb on + strand, within ydhSat 1745.351 kb on + strand, within ydhSat 1745.600 kb on - strand, within ydhSat 1745.646 kb on + strand, within ydhSat 1745.649 kb on - strand, within ydhSat 1745.735 kb on - strand, within ydhSat 1745.752 kb on + strand, within ydhSat 1745.752 kb on + strand, within ydhSat 1745.934 kb on + strand, within ydhSat 1746.064 kb on + strand, within ydhSat 1746.072 kb on - strand, within ydhSat 1746.072 kb on - strand, within ydhSat 1746.195 kb on + strand, within ydhSat 1746.347 kb on + strand, within ydhSat 1746.526 kb on - strand, within ydhSat 1746.854 kb on - strand, within ydhTat 1746.877 kb on + strand, within ydhTat 1746.969 kb on + strand, within ydhT

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 0.5mM
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1,744,176 - -0.3
1,744,194 - -0.1
1,744,570 + valW b1666 0.39 -0.3
1,744,671 - -0.3
1,744,797 - ydhR b1667 0.24 +1.4
1,744,953 + ydhR b1667 0.75 +0.3
1,745,178 - +0.8
1,745,178 - -0.3
1,745,272 + -0.7
1,745,288 + -0.1
1,745,349 + ydhS b1668 0.12 +1.1
1,745,351 + ydhS b1668 0.12 +0.5
1,745,351 + ydhS b1668 0.12 +0.1
1,745,600 - ydhS b1668 0.28 +2.2
1,745,646 + ydhS b1668 0.31 -0.5
1,745,649 - ydhS b1668 0.31 -1.1
1,745,735 - ydhS b1668 0.36 +0.0
1,745,752 + ydhS b1668 0.37 +0.1
1,745,752 + ydhS b1668 0.37 -0.1
1,745,934 + ydhS b1668 0.49 +0.6
1,746,064 + ydhS b1668 0.57 +0.4
1,746,072 - ydhS b1668 0.57 +2.6
1,746,072 - ydhS b1668 0.57 -1.8
1,746,195 + ydhS b1668 0.65 +0.7
1,746,347 + ydhS b1668 0.74 +1.6
1,746,526 - ydhS b1668 0.85 +0.9
1,746,854 - ydhT b1669 0.10 -0.6
1,746,877 + ydhT b1669 0.13 +0.4
1,746,969 + ydhT b1669 0.24 -0.1

Or see this region's nucleotide sequence