Strain Fitness in Escherichia coli BW25113 around b4003

Experiment: carbon source D-Mannose 5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source D-Mannose 5mM
4,198,996	+	yjaH	b4001	0.58	-0.4
4,199,081	-	yjaH	b4001	0.71	+1.4
4,199,152	+	yjaH	b4001	0.81	-1.2
4,199,175	+	yjaH	b4001	0.84	-4.2
4,199,207	-	yjaH	b4001	0.89	-3.0
4,199,217	-				+0.9
4,199,256	+				-0.6
4,199,303	-				+1.2
4,199,308	-				+0.0
4,199,309	-				+2.2
4,199,434	+	yjaI	b4002	0.35	-1.2
4,199,434	+	yjaI	b4002	0.35	-3.7
4,199,460	+	yjaI	b4002	0.41	-0.4
4,199,489	-	yjaI	b4002	0.48	+0.5
4,199,517	-	yjaI	b4002	0.54	+0.7
4,199,587	+	yjaI	b4002	0.71	-0.9
4,199,620	-	yjaI	b4002	0.78	+0.4
4,199,620	-	yjaI	b4002	0.78	+2.2
4,199,620	-	yjaI	b4002	0.78	+1.8
4,199,620	-	yjaI	b4002	0.78	-4.7
4,199,620	-	yjaI	b4002	0.78	-3.3
4,199,652	-	yjaI	b4002	0.86	-2.8
4,199,665	+	yjaI	b4002	0.89	+0.4
4,199,772	+				+0.3
4,199,973	-				-2.6
4,200,009	-				+0.8
4,200,009	-				-0.4
4,200,016	+				+2.0
4,200,020	-				-3.4
4,200,020	-				-0.1
4,200,169	+	zraS	b4003	0.16	+0.2
4,200,180	-	zraS	b4003	0.17	+1.9
4,200,197	-	zraS	b4003	0.18	-0.4
4,200,218	+	zraS	b4003	0.19	+1.9
4,200,257	+	zraS	b4003	0.22	+3.9
4,200,257	+	zraS	b4003	0.22	+4.2
4,200,378	+	zraS	b4003	0.31	+0.5
4,200,398	-	zraS	b4003	0.32	-0.6
4,200,431	+	zraS	b4003	0.34	+1.9
4,200,441	-	zraS	b4003	0.35	-2.0
4,200,441	-	zraS	b4003	0.35	+1.1
4,200,525	+	zraS	b4003	0.41	+1.5
4,200,525	+	zraS	b4003	0.41	+0.0
4,200,530	+	zraS	b4003	0.42	-0.7
4,200,532	+	zraS	b4003	0.42	-0.1
4,200,533	-	zraS	b4003	0.42	-3.6
4,200,586	-	zraS	b4003	0.46	-1.4
4,200,647	-	zraS	b4003	0.50	-0.6
4,200,647	-	zraS	b4003	0.50	-1.2
4,200,755	-	zraS	b4003	0.58	+0.8
4,200,757	-	zraS	b4003	0.58	+1.2
4,200,801	-	zraS	b4003	0.61	-1.6
4,200,902	-	zraS	b4003	0.68	-2.4
4,200,965	-	zraS	b4003	0.73	+1.5
4,200,965	-	zraS	b4003	0.73	-2.9
4,201,008	-	zraS	b4003	0.76	+0.7
4,201,008	-	zraS	b4003	0.76	-1.7
4,201,013	-	zraS	b4003	0.76	-0.3
4,201,013	-	zraS	b4003	0.76	-2.9
4,201,013	-	zraS	b4003	0.76	+1.0
4,201,023	-	zraS	b4003	0.77	+1.4
4,201,023	-	zraS	b4003	0.77	-0.3
4,201,028	-	zraS	b4003	0.77	-2.1
4,201,051	-	zraS	b4003	0.79	-2.2
4,201,150	+	zraS	b4003	0.86	+1.9
4,201,150	+	zraS	b4003	0.86	+3.8
4,201,250	+				+2.7
4,201,308	-				-1.5
4,201,313	+				+1.1
4,201,313	+				+0.7
4,201,362	+				-0.9
4,201,409	+				-2.9
4,201,428	-				-0.4
4,201,509	+	zraR	b4004	0.13	+0.0
4,201,593	-	zraR	b4004	0.19	-3.2
4,201,593	-	zraR	b4004	0.19	+1.1
4,201,600	+	zraR	b4004	0.19	+1.3
4,201,600	+	zraR	b4004	0.19	-2.7
4,201,640	-	zraR	b4004	0.22	+0.5
4,201,685	-	zraR	b4004	0.26	-0.7
4,201,707	+	zraR	b4004	0.27	+1.8
4,201,717	+	zraR	b4004	0.28	+1.4
4,201,719	+	zraR	b4004	0.28	-0.3
4,201,722	-	zraR	b4004	0.29	-0.4
4,201,722	-	zraR	b4004	0.29	+0.3
4,201,727	-	zraR	b4004	0.29	+2.1
4,201,727	-	zraR	b4004	0.29	+1.6
4,201,727	-	zraR	b4004	0.29	-1.3
4,201,746	+	zraR	b4004	0.30	+0.6
4,201,756	+	zraR	b4004	0.31	+0.7
4,201,789	-	zraR	b4004	0.34	+1.2
4,201,798	+	zraR	b4004	0.34	+1.0
4,201,798	+	zraR	b4004	0.34	+0.4
4,201,841	+	zraR	b4004	0.38	-2.1
4,201,873	+	zraR	b4004	0.40	+1.4
4,201,932	+	zraR	b4004	0.44	+0.0
4,201,935	-	zraR	b4004	0.45	+2.1
4,201,935	-	zraR	b4004	0.45	+0.0
4,201,945	+	zraR	b4004	0.45	+0.1
4,202,109	+	zraR	b4004	0.58	-0.6
4,202,111	+	zraR	b4004	0.58	+2.0
4,202,195	-	zraR	b4004	0.64	+0.2
4,202,199	+	zraR	b4004	0.65	-3.0
4,202,214	-	zraR	b4004	0.66	-0.5
4,202,239	-	zraR	b4004	0.68	-0.5
4,202,239	-	zraR	b4004	0.68	-2.7