Experiment: carbon source D-Mannose 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ylbE and ylbF are separated by 10 nucleotides ylbF and ybcF overlap by 4 nucleotides
b4572: ylbE - no description, at 547,581 to 548,839
ylbE
b0520: ylbF - hypothetical protein (NCBI), at 548,850 to 549,665
ylbF
b0521: ybcF - predicted carbamate kinase (NCBI), at 549,662 to 550,555
ybcF
Position (kb) 548
549
550 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 547.895 kb on - strand, within ylbE at 548.009 kb on + strand, within ylbE at 548.151 kb on - strand, within ylbE at 548.165 kb on + strand, within ylbE at 548.165 kb on + strand, within ylbE at 548.208 kb on - strand, within ylbE at 548.208 kb on - strand, within ylbE at 548.506 kb on + strand, within ylbE at 548.533 kb on + strand, within ylbE at 548.533 kb on + strand, within ylbE at 548.700 kb on + strand, within ylbE at 548.708 kb on - strand, within ylbE at 548.713 kb on - strand, within ylbE at 548.718 kb on - strand at 548.755 kb on + strand at 548.833 kb on + strand at 549.010 kb on + strand, within ylbF at 549.010 kb on + strand, within ylbF at 549.046 kb on - strand, within ylbF at 549.046 kb on - strand, within ylbF at 549.219 kb on + strand, within ylbF at 549.354 kb on - strand, within ylbF at 549.354 kb on - strand, within ylbF at 549.392 kb on + strand, within ylbF at 549.450 kb on + strand, within ylbF at 549.450 kb on + strand, within ylbF at 549.458 kb on + strand, within ylbF at 549.488 kb on + strand, within ylbF at 549.491 kb on - strand, within ylbF at 549.534 kb on + strand, within ylbF at 549.625 kb on + strand at 549.695 kb on + strand at 549.755 kb on + strand, within ybcF at 549.755 kb on + strand, within ybcF at 549.764 kb on + strand, within ybcF at 549.811 kb on - strand, within ybcF at 549.933 kb on + strand, within ybcF at 549.933 kb on + strand, within ybcF at 549.954 kb on - strand, within ybcF at 550.141 kb on - strand, within ybcF at 550.363 kb on + strand, within ybcF at 550.471 kb on - strand at 550.539 kb on + strand at 550.550 kb on - strand at 550.563 kb on + strand at 550.563 kb on - strand at 550.607 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source D-Mannose 5mM remove 547,895 - ylbE b4572 0.25 +0.7 548,009 + ylbE b4572 0.34 -1.6 548,151 - ylbE b4572 0.45 -1.1 548,165 + ylbE b4572 0.46 +0.6 548,165 + ylbE b4572 0.46 -4.3 548,208 - ylbE b4572 0.50 +1.1 548,208 - ylbE b4572 0.50 +0.0 548,506 + ylbE b4572 0.73 +0.5 548,533 + ylbE b4572 0.76 +1.3 548,533 + ylbE b4572 0.76 -2.9 548,700 + ylbE b4572 0.89 -1.6 548,708 - ylbE b4572 0.90 -0.1 548,713 - ylbE b4572 0.90 +0.8 548,718 - -1.4 548,755 + -0.3 548,833 + +0.9 549,010 + ylbF b0520 0.20 -2.4 549,010 + ylbF b0520 0.20 -3.2 549,046 - ylbF b0520 0.24 -3.2 549,046 - ylbF b0520 0.24 +0.0 549,219 + ylbF b0520 0.45 -3.8 549,354 - ylbF b0520 0.62 -2.4 549,354 - ylbF b0520 0.62 -2.3 549,392 + ylbF b0520 0.66 -2.0 549,450 + ylbF b0520 0.74 -0.1 549,450 + ylbF b0520 0.74 -1.8 549,458 + ylbF b0520 0.75 -1.4 549,488 + ylbF b0520 0.78 +0.6 549,491 - ylbF b0520 0.79 +0.6 549,534 + ylbF b0520 0.84 -0.4 549,625 + -4.8 549,695 + +1.3 549,755 + ybcF b0521 0.10 +0.2 549,755 + ybcF b0521 0.10 +0.8 549,764 + ybcF b0521 0.11 -2.6 549,811 - ybcF b0521 0.17 +1.0 549,933 + ybcF b0521 0.30 +1.1 549,933 + ybcF b0521 0.30 -1.9 549,954 - ybcF b0521 0.33 -2.7 550,141 - ybcF b0521 0.54 +0.2 550,363 + ybcF b0521 0.78 +3.3 550,471 - +1.3 550,539 + -0.1 550,550 - +3.7 550,563 + +0.9 550,563 - -1.5 550,607 + -1.0
Or see this region's nucleotide sequence