Strain Fitness in Escherichia coli BW25113 around b3550

Experiment: carbon source D-Mannose 20mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source D-Mannose 20mM
3,710,694	-	yhjY	b3548	0.62	-2.0
3,710,703	-	yhjY	b3548	0.64	+0.2
3,710,729	+	yhjY	b3548	0.67	-0.8
3,710,732	-	yhjY	b3548	0.68	-0.1
3,710,779	-	yhjY	b3548	0.74	-0.7
3,710,797	-	yhjY	b3548	0.77	-1.6
3,710,798	-	yhjY	b3548	0.77	+0.5
3,710,799	-	yhjY	b3548	0.77	-0.3
3,710,800	+	yhjY	b3548	0.77	-1.3
3,710,800	+	yhjY	b3548	0.77	+0.9
3,710,800	+	yhjY	b3548	0.77	+0.4
3,710,805	+	yhjY	b3548	0.78	+1.3
3,710,805	+	yhjY	b3548	0.78	+1.2
3,710,805	+	yhjY	b3548	0.78	+1.0
3,710,805	+	yhjY	b3548	0.78	+0.0
3,710,820	-	yhjY	b3548	0.80	-5.2
3,710,859	-	yhjY	b3548	0.86	+0.3
3,710,868	+	yhjY	b3548	0.87	-0.1
3,710,917	+				+0.7
3,710,919	+				-2.5
3,710,966	+				+1.1
3,710,966	+				-3.2
3,710,966	+				-1.1
3,710,966	-				+2.1
3,710,966	-				+3.2
3,710,974	-				+0.2
3,711,005	+				-0.3
3,711,005	+				-0.3
3,711,010	-				-2.0
3,711,011	-				+0.8
3,711,019	-				-0.2
3,711,042	-				+1.0
3,711,091	+				-0.1
3,711,123	+				-0.9
3,711,137	+				-1.4
3,711,137	+				+1.1
3,711,155	-				-0.7
3,711,162	+				+1.7
3,711,162	+				-0.1
3,711,183	+	tag	b3549	0.12	-0.6
3,711,183	+	tag	b3549	0.12	-0.2
3,711,229	+	tag	b3549	0.20	+0.4
3,711,298	-	tag	b3549	0.32	+0.2
3,711,298	-				-0.1
3,711,352	+	tag	b3549	0.42	-0.6
3,711,357	-	tag	b3549	0.43	-0.8
3,711,357	-	tag	b3549	0.43	+0.2
3,711,360	-	tag	b3549	0.43	-3.8
3,711,360	-	tag	b3549	0.43	+0.4
3,711,421	-	tag	b3549	0.54	+0.3
3,711,433	-	tag	b3549	0.56	+0.0
3,711,490	-	tag	b3549	0.66	-1.0
3,711,498	+	tag	b3549	0.68	-0.0
3,711,500	-	tag	b3549	0.68	+0.8
3,711,534	-	tag	b3549	0.74	-0.8
3,711,534	-	tag	b3549	0.74	+0.1
3,711,613	-	tag	b3549	0.88	-1.1
3,711,613	-	tag	b3549	0.88	-0.6
3,711,617	+	tag	b3549	0.89	+0.4
3,711,617	+	tag	b3549	0.89	+1.0
3,711,617	+	tag	b3549	0.89	-0.1
3,711,625	-				-0.6
3,711,635	-				+2.0
3,711,645	-				-0.2
3,711,645	-				+0.2
3,711,648	+				+0.2
3,711,702	-				+0.3
3,711,739	-	yiaC	b3550	0.15	+0.6
3,711,751	+	yiaC	b3550	0.17	+0.1
3,711,751	+	yiaC	b3550	0.17	+0.9
3,711,786	-	yiaC	b3550	0.25	+0.1
3,711,873	-	yiaC	b3550	0.45	+0.4
3,711,873	-	yiaC	b3550	0.45	-0.5
3,711,873	-	yiaC	b3550	0.45	+0.8
3,711,874	-	yiaC	b3550	0.45	-1.3
3,711,923	-	yiaC	b3550	0.56	-1.3
3,711,946	+	yiaC	b3550	0.61	+0.8
3,711,946	+	yiaC	b3550	0.61	-0.7
3,711,949	+	yiaC	b3550	0.62	+0.4
3,711,954	-	yiaC	b3550	0.63	-1.2
3,711,954	-	yiaC	b3550	0.63	-3.6
3,711,970	+	yiaC	b3550	0.67	+0.4
3,711,973	-	yiaC	b3550	0.68	+0.4
3,712,058	+	yiaC	b3550	0.87	+2.0
3,712,073	+				+0.5
3,712,116	-				+1.5
3,712,118	-				-0.7
3,712,118	-				+0.2
3,712,135	+				-0.6
3,712,135	+				-0.4
3,712,174	+				-0.8
3,712,191	+				-1.1
3,712,191	+				+0.3
3,712,236	-				-0.2
3,712,236	-				-1.1
3,712,305	+				+0.3
3,712,320	+	bisC	b3551	0.10	-2.1
3,712,320	+	bisC	b3551	0.10	-0.2
3,712,349	+	bisC	b3551	0.11	-0.6
3,712,357	-	bisC	b3551	0.12	-0.3
3,712,364	+	bisC	b3551	0.12	+0.9
3,712,364	+	bisC	b3551	0.12	-3.7
3,712,374	-	bisC	b3551	0.12	+0.8
3,712,374	-	bisC	b3551	0.12	+0.5
3,712,382	+	bisC	b3551	0.13	+0.1
3,712,405	-				-1.7
3,712,408	+	bisC	b3551	0.14	-0.7
3,712,411	-	bisC	b3551	0.14	+1.3
3,712,418	+	bisC	b3551	0.14	+0.0
3,712,441	+	bisC	b3551	0.15	-0.2
3,712,459	+	bisC	b3551	0.16	+0.5
3,712,462	-	bisC	b3551	0.16	+0.2
3,712,462	-	bisC	b3551	0.16	+1.2
3,712,487	+	bisC	b3551	0.17	+0.0
3,712,494	-	bisC	b3551	0.18	+0.3
3,712,502	-	bisC	b3551	0.18	+1.7
3,712,502	-	bisC	b3551	0.18	+0.3
3,712,564	-	bisC	b3551	0.21	-0.6
3,712,565	-	bisC	b3551	0.21	+0.3
3,712,566	+	bisC	b3551	0.21	+0.1
3,712,566	+	bisC	b3551	0.21	+0.0
3,712,574	-	bisC	b3551	0.21	+0.4
3,712,579	-	bisC	b3551	0.21	-0.5
3,712,584	-	bisC	b3551	0.21	+0.9
3,712,595	+	bisC	b3551	0.22	+0.5
3,712,879	-	bisC	b3551	0.34	+2.6
3,712,895	+	bisC	b3551	0.35	-2.3
3,712,970	+	bisC	b3551	0.38	+1.1
3,712,970	+	bisC	b3551	0.38	+0.6
3,712,970	+	bisC	b3551	0.38	+0.4
3,713,000	-	bisC	b3551	0.39	-2.0
3,713,018	+	bisC	b3551	0.40	-4.1
3,713,026	-	bisC	b3551	0.40	+1.0
3,713,042	+	bisC	b3551	0.41	-1.1
3,713,110	-	bisC	b3551	0.44	+1.1
3,713,110	-	bisC	b3551	0.44	+0.6
3,713,115	+	bisC	b3551	0.44	+0.7
3,713,115	+	bisC	b3551	0.44	+0.3