Strain Fitness in Escherichia coli BW25113 around b1291

Experiment: carbon source D-Glucose 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycjD and sapF are separated by 67 nucleotidessapF and sapD are separated by 1 nucleotidessapD and sapC overlap by 1 nucleotidessapC and sapB overlap by 14 nucleotides b1289: ycjD - hypothetical protein (NCBI), at 1,349,431 to 1,349,784 ycjD b1290: sapF - predicted antimicrobial peptide transporter subunit (NCBI), at 1,349,852 to 1,350,658 sapF b1291: sapD - predicted antimicrobial peptide transporter subunit (NCBI), at 1,350,660 to 1,351,652 sapD b1292: sapC - predicted antimicrobial peptide transporter subunit (NCBI), at 1,351,652 to 1,352,542 sapC b1293: sapB - predicted antimicrobial peptide transporter subunit (NCBI), at 1,352,529 to 1,353,494 sapB Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -2 -1 0 1 2at 1349.963 kb on - strand, within sapFat 1350.108 kb on + strand, within sapFat 1350.244 kb on + strandat 1350.244 kb on + strand, within sapFat 1350.286 kb on + strand, within sapFat 1350.294 kb on - strand, within sapFat 1350.550 kb on + strand, within sapFat 1350.656 kb on - strandat 1350.749 kb on + strandat 1350.855 kb on + strand, within sapDat 1350.861 kb on + strand, within sapDat 1350.997 kb on - strand, within sapDat 1351.021 kb on - strand, within sapDat 1351.342 kb on - strand, within sapDat 1351.739 kb on - strandat 1352.074 kb on - strand, within sapCat 1352.113 kb on + strand, within sapCat 1352.173 kb on + strand, within sapCat 1352.173 kb on + strand, within sapCat 1352.254 kb on + strand, within sapCat 1352.290 kb on - strand, within sapCat 1352.351 kb on - strand, within sapCat 1352.438 kb on + strand, within sapC

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Glucose 20mM
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1,349,963 - sapF b1290 0.14 -0.6
1,350,108 + sapF b1290 0.32 +1.4
1,350,244 + -1.4
1,350,244 + sapF b1290 0.49 +2.0
1,350,286 + sapF b1290 0.54 +0.4
1,350,294 - sapF b1290 0.55 +1.9
1,350,550 + sapF b1290 0.86 -1.2
1,350,656 - +0.7
1,350,749 + +0.8
1,350,855 + sapD b1291 0.20 +1.5
1,350,861 + sapD b1291 0.20 +2.5
1,350,997 - sapD b1291 0.34 -2.7
1,351,021 - sapD b1291 0.36 +1.8
1,351,342 - sapD b1291 0.69 +2.0
1,351,739 - -1.0
1,352,074 - sapC b1292 0.47 +0.3
1,352,113 + sapC b1292 0.52 +0.5
1,352,173 + sapC b1292 0.58 -0.2
1,352,173 + sapC b1292 0.58 +1.0
1,352,254 + sapC b1292 0.68 +1.4
1,352,290 - sapC b1292 0.72 -2.0
1,352,351 - sapC b1292 0.78 -0.8
1,352,438 + sapC b1292 0.88 -0.4

Or see this region's nucleotide sequence