Experiment: carbon source D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cydC and cydD are separated by 0 nucleotides cydD and trxB are separated by 122 nucleotides
b0886: cydC - fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component (NCBI), at 926,697 to 928,418
cydC
b0887: cydD - fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component (NCBI), at 928,419 to 930,185
cydD
b0888: trxB - thioredoxin reductase, FAD/NAD(P)-binding (NCBI), at 930,308 to 931,273
trxB
Position (kb) 928
929
930
931 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 928.435 kb on - strand at 928.435 kb on - strand at 928.435 kb on - strand at 928.445 kb on + strand at 928.445 kb on + strand at 928.481 kb on - strand at 930.352 kb on + strand at 930.373 kb on - strand at 930.373 kb on - strand at 930.410 kb on + strand, within trxB at 930.456 kb on - strand, within trxB at 930.458 kb on + strand, within trxB at 930.554 kb on - strand, within trxB at 930.610 kb on - strand, within trxB at 930.612 kb on + strand, within trxB at 930.634 kb on - strand at 930.848 kb on - strand, within trxB at 930.848 kb on - strand, within trxB at 930.863 kb on + strand, within trxB at 930.913 kb on - strand, within trxB at 930.939 kb on + strand, within trxB at 931.019 kb on + strand, within trxB at 931.137 kb on - strand, within trxB
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source D-Glucose 20mM remove 928,435 - +1.4 928,435 - +1.0 928,435 - -4.5 928,445 + +0.5 928,445 + -3.4 928,481 - +0.1 930,352 + -0.3 930,373 - -3.7 930,373 - -2.0 930,410 + trxB b0888 0.11 -3.4 930,456 - trxB b0888 0.15 -1.5 930,458 + trxB b0888 0.16 -0.5 930,554 - trxB b0888 0.25 -1.1 930,610 - trxB b0888 0.31 -3.7 930,612 + trxB b0888 0.31 -1.8 930,634 - -0.5 930,848 - trxB b0888 0.56 -1.9 930,848 - trxB b0888 0.56 -1.9 930,863 + trxB b0888 0.57 +1.2 930,913 - trxB b0888 0.63 -1.3 930,939 + trxB b0888 0.65 -1.7 931,019 + trxB b0888 0.74 -2.3 931,137 - trxB b0888 0.86 -3.1
Or see this region's nucleotide sequence